Smarca5-ps Pseudogene Detail

Summary

• Symbol
  Smarca5-ps
• Name
  SNF2 related chromatin remodeling ATPase 5, pseudogene
• Synonyms
  9230115A19Rik, OTTMUSG00000011029, Vmn2r-ps14

• Feature Type
  pseudogene
• IDs
  MGI:2443330
  NCBI Gene: 545700
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:145190868-145193990 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 78.20 cM
• Mapping Data
  3 experiments

Strain
Comparison

• SNPs within 2kb
  100 from dbSNP Build 142
• Strain Annotations
  5

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2443330	pseudogene	Chr4:145190780-145194531 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0040245	pseudogene	Chr4:155799447-155801553 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036909	pseudogene	Chr8:72193935-72232729 (-)
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0040386	pseudogene	Chr8:80537528-80579955 (-)
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0037922	pseudogene	Chr8:79343124-79387120 (-)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Smarca5-ps
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Smarca5-ps
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  11
• RefSeq
  1

• Ensembl
  ENSMUSG00000052912 (Evidence)
• NCBI Gene
  545700

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000052912	Ensembl Gene Model | MGI Sequence Detail	3123	C57BL/6J
transcript	ENSMUST00000121843	Ensembl | MGI Sequence Detail	3123	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 3

Other
Accession IDs

MGI:3651693

References

• Summaries
  All 13

  Phenotypes 2
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:125082 Young JM, et al., V2R gene families degenerated in primates, dog and cow, but expanded in opossum. Trends Genet. 2007 May;23(5):212-5