B830012L14Rik Gene Detail

Summary

• Symbol
  B830012L14Rik
• Name
  RIKEN cDNA B830012L14 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2443332
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr12:109642711-109680989 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  522 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2443332	lncRNA gene	Chr12:109642711-109680989 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0005412	lincRNA gene	Chr12:111936922-111943923 (+)
A/J	MGP_AJ_G0005395	lincRNA gene	Chr12:107620315-107627314 (+)
AKR/J	MGP_AKRJ_G0005375	lincRNA gene	Chr12:110755944-110762941 (+)
BALB/cJ	MGP_BALBcJ_G0005377	lincRNA gene	Chr12:108092149-108099150 (+)
C3H/HeJ	MGP_C3HHeJ_G0005325	lincRNA gene	Chr12:111202312-111209319 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005531	lincRNA gene	Chr12:115348693-115355694 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004916	lincRNA gene	Chr12:104141549-104148716 (+)
CAST/EiJ	MGP_CASTEiJ_G0005270	lincRNA gene	Chr12:106160249-106167238 (+)
CBA/J	MGP_CBAJ_G0005314	lincRNA gene	Chr12:119885085-119892072 (+)
DBA/2J	MGP_DBA2J_G0005331	lincRNA gene	Chr12:107176084-107183086 (+)
FVB/NJ	MGP_FVBNJ_G0005357	lincRNA gene	Chr12:105967787-105974788 (+)
LP/J	MGP_LPJ_G0005414	lincRNA gene	Chr12:111760041-111767042 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005339	lincRNA gene	Chr12:123045016-123052487 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005531	lincRNA gene	Chr12:110242482-110249471 (+)
PWK/PhJ	MGP_PWKPhJ_G0005219	lincRNA gene	Chr12:101786048-101793096 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0005140	lincRNA gene	Chr12:104407234-104414069 (+)
WSB/EiJ	MGP_WSBEiJ_G0005320	lincRNA gene	Chr12:111157298-111164301 (+)

Homology

• Gene Tree
  B830012L14Rik
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  789
• Tissues
  45
• cDNA Data
  3
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26

• Ensembl
  ENSMUSG00000098202 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000098202	Ensembl Gene Model | MGI Sequence Detail	38279	C57BL/6J
transcript	ENSMUST00000238810	Ensembl | MGI Sequence Detail	5167	Not Applicable

Molecular
Reagents

• All nucleic 5

  cDNA 3

  Primer pair 2

References

• Summaries
  All 5

  Developmental Gene Expression 1
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:177403 Zhang FW, et al., Imprinting and expression analysis of a non-coding RNA gene in the mouse Dlk1-Dio3 domain. J Mol Histol. 2011 Aug;42(4):333-9

TSS for B830012L14Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr115171	Chr12:109666522-109666527 (+)	23,814 bp
Tssr115172	Chr12:109672221-109672231 (+)	29,515 bp
Tssr115173	Chr12:109673231-109673246 (+)	30,528 bp