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Slc38a11 Gene Detail
Summary
  • Symbol
    Slc38a11
  • Name
    solute carrier family 38, member 11
  • Synonyms
    9330158F14Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2443383
    NCBI Gene: 320106
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:65146774-65194378 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 38.47 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    1649 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2443383
 protein coding gene Chr2:65144007-65194606 (-)
129S1/SvImJ MGP_129S1SvImJ_G0025778
 protein coding gene Chr2:65116987-65170636 (-)
A/J MGP_AJ_G0025754
 protein coding gene Chr2:62607975-62656022 (-)
AKR/J MGP_AKRJ_G0025724
 protein coding gene Chr2:64280689-64331348 (-)
BALB/cJ MGP_BALBcJ_G0025749
 protein coding gene Chr2:62761287-62809157 (-)
C3H/HeJ MGP_C3HHeJ_G0025510
 protein coding gene Chr2:64447058-64497033 (-)
C57BL/6NJ MGP_C57BL6NJ_G0026196
 protein coding gene Chr2:67037989-67085379 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0023600
 protein coding gene Chr2:59979304-60026581 (-)
CAST/EiJ MGP_CASTEiJ_G0024974
 protein coding gene Chr2:64504632-64554348 (-)
CBA/J MGP_CBAJ_G0025490
 protein coding gene Chr2:69567913-69617414 (-)
DBA/2J MGP_DBA2J_G0025621
 protein coding gene Chr2:62232880-62281891 (-)
FVB/NJ MGP_FVBNJ_G0025583
 protein coding gene Chr2:61662080-61709121 (-)
LP/J MGP_LPJ_G0025709
 protein coding gene Chr2:64929231-64980010 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0025614
 protein coding gene Chr2:71513711-71579595 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0026253
 protein coding gene Chr2:64341189-64390264 (-)
PWK/PhJ MGP_PWKPhJ_G0024715
 protein coding gene Chr2:62054742-62105596 (-)
SPRET/EiJ MGP_SPRETEiJ_G0024522
 protein coding gene Chr2:64500022-64549734 (-)
WSB/EiJ MGP_WSBEiJ_G0025042
 protein coding gene Chr2:64707597-64758635 (-)



Homology
more
  • Human Ortholog
    SLC38A11, solute carrier family 38 member 11
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SLC38A11, solute carrier family 38 member 11
  • Synonyms
    AVT2
  • Links
    NCBI Gene ID: 151258
    neXtProt AC: NX_Q08AI6
    UniProt: Q08AI6

  • Chr Location
    2q24.3; chr2:164894354-164955525 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotypes from 2 alleles in 2 genetic backgrounds
    9 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    6
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    808
  • Tissues
    101
  • cDNA Data
    4
  • Literature Summary
    4
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000061171 Ensembl Gene Model | MGI Sequence Detail 47605 C57BL/6J ±  kb
    transcript ENSMUST00000112420 Ensembl | MGI Sequence Detail 1606 Not Applicable  
    polypeptide ENSMUSP00000108039 Ensembl | MGI Sequence Detail 453 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      7 Sequences
    • Protein Ontology
      PR:000031587 putative sodium-coupled neutral amino acid transporter 11
      (term hierarchy)
    • InterPro Domains
      IPR013057 Amino acid transporter, transmembrane domain
    • GlyGen
      Q3USY0 2 sites
    Molecular
    Reagents
    less
    • All nucleic 6
      Genomic 2
      cDNA 4

      Microarray probesets 1
    References
    more
    • Summaries
      All 28
      Developmental Gene Expression 4
      Gene Ontology 3
      Phenotypes 9
    • Earliest
      J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
    • Latest
      J:346372 Kolesova H, et al., Reprogramming of the developing heart by Hif1a-deficient sympathetic system and maternal diabetes exposure. Front Endocrinol (Lausanne). 2024;15:1344074
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/12/2024
    MGI 6.24     		The Jackson Laboratory