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A330009N23Rik Gene Detail
Summary
  • Symbol
    A330009N23Rik
  • Name
    RIKEN cDNA A330009N23 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:2443491
    NCBI Gene: 380977
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:101119072-101123067 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 15, 56.56 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    129 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2443491
 lncRNA gene Chr15:101118839-101123080 (-)
129S1/SvImJ MGP_129S1SvImJ_G0005626
 lincRNA gene Chr15:103269603-103272528 (-)
A/J MGP_AJ_G0005613
 lincRNA gene Chr15:99184337-99187262 (-)
AKR/J MGP_AKRJ_G0005592
 lincRNA gene Chr15:102206419-102209344 (-)
BALB/cJ MGP_BALBcJ_G0005593
 lincRNA gene Chr15:99286631-99289556 (-)
C3H/HeJ MGP_C3HHeJ_G0005540
 lincRNA gene Chr15:102293379-102296304 (-)
C57BL/6NJ MGP_C57BL6NJ_G0005751
 lincRNA gene Chr15:107111402-107114327 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0005116
 lincRNA gene Chr15:94919947-94922964 (-)
CAST/EiJ MGP_CASTEiJ_G0005484
 lincRNA gene Chr15:103144652-103147577 (-)
CBA/J MGP_CBAJ_G0005530
 lincRNA gene Chr15:110823762-110826687 (-)
DBA/2J MGP_DBA2J_G0005545
 lincRNA gene Chr15:98516685-98519610 (-)
FVB/NJ MGP_FVBNJ_G0005572
 lincRNA gene Chr15:97565914-97568839 (-)
LP/J MGP_LPJ_G0005629
 lincRNA gene Chr15:103408054-103410979 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0005557
 lincRNA gene Chr15:114517864-114520789 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0005751
 lincRNA gene Chr15:102231808-102234733 (-)
PWK/PhJ MGP_PWKPhJ_G0005433
 lincRNA gene Chr15:98672016-98674941 (-)
SPRET/EiJ MGP_SPRETEiJ_G0005351
 lincRNA gene Chr15:102127355-102130343 (-)
WSB/EiJ MGP_WSBEiJ_G0005534
 lincRNA gene Chr15:102855239-102858164 (-)



Homology
less
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    20 phenotype references
  • All Mutations and Alleles
    3
  • Chemically induced (other)
    1
  • Radiation induced
    2
  • Genomic Mutations
    3 involving A330009N23Rik
  • Find Mice (IMSR)
    0 strains or lines available
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    858
  • Tissues
    37
  • cDNA Data
    9
  • Literature Summary
    3
Sequences &
Gene Models
less
  • All Sequences
    36
  • RefSeq
    4
Representative SequencesLengthStrain/SpeciesFlank
genomic 380977 NCBI Gene Model | MGI Sequence Detail 3996 C57BL/6J ±  kb
transcript NR_045326 RefSeq | MGI Sequence Detail 1397 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 10
    cDNA 10

    Microarray probesets 1
References
more
  • Summaries
    All 34
    Developmental Gene Expression 3
    Diseases 1
    Phenotypes 20
  • Earliest
    J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
  • Latest
    J:285676 Suzuki A, et al., Genes and microRNAs associated with mouse cleft palate: A systematic review and bioinformatics analysis. Mech Dev. 2018 Apr;150:21-27
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory