D130019J16Rik Gene Detail

Summary

• Symbol
  D130019J16Rik
• Name
  RIKEN cDNA D130019J16 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2443523
  NCBI Gene: 320171
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:137862927-137865084 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  115 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2443523	lncRNA gene	Chr1:137862927-137865084 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0000614	unclassified gene	Chr1:141933223-141936325 (+)
A/J	MGP_AJ_G0000588	unclassified gene	Chr1:136448775-136450917 (+)
AKR/J	MGP_AKRJ_G0000577	unclassified gene	Chr1:140540267-140544234 (+)
BALB/cJ	MGP_BALBcJ_G0000580	unclassified gene	Chr1:136780761-136782914 (+)
C3H/HeJ	MGP_C3HHeJ_G0000567	unclassified gene	Chr1:140642638-140646650 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0000697	unclassified gene	Chr1:146926325-146928482 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0000442	unclassified gene	Chr1:129502756-129504759 (+)
CAST/EiJ	MGP_CASTEiJ_G0000561	unclassified gene	Chr1:139795339-139799226 (+)
CBA/J	MGP_CBAJ_G0000558	unclassified gene	Chr1:151988664-151990812 (+)
DBA/2J	MGP_DBA2J_G0000562	unclassified gene	Chr1:135431770-135433984 (+)
FVB/NJ	MGP_FVBNJ_G0000576	unclassified gene	Chr1:134086869-134089289 (+)
LP/J	MGP_LPJ_G0000620	unclassified gene	Chr1:143044981-143047133 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0000571	unclassified gene	Chr1:157638352-157640503 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0000689	unclassified gene	Chr1:140313515-140315661 (+)
PWK/PhJ	MGP_PWKPhJ_G0000513	unclassified gene	Chr1:134518571-134520826 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0000489	unclassified gene	Chr1:139301037-139303027 (+)
WSB/EiJ	MGP_WSBEiJ_G0000564	unclassified gene	Chr1:140343359-140346206 (+)

Homology

• Gene Tree
  D130019J16Rik
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000104145 (Evidence)
• NCBI Gene
  320171

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104145	Ensembl Gene Model | MGI Sequence Detail	2158	C57BL/6J
transcript	AK051229	GenBank | ENA | DDBJ | MGI Sequence Detail	2020	C57BL/6J

Molecular
Reagents

• All nucleic 5

  cDNA 5

References

• Summaries
  All 7
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for D130019J16Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr9125	Chr1:137864763-137864768 (+)	1,839 bp