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A830082K12Rik Gene Detail
Summary
  • Symbol
    A830082K12Rik
  • Name
    RIKEN cDNA A830082K12 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:2443527
    NCBI Gene: 320174
  • Alliance
    gene page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr13:78346136-78384683 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 13, 41.38 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    943 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2443527
 lncRNA gene Chr13:78346136-78427510 (+)
129S1/SvImJ MGP_129S1SvImJ_G0003201
 antisense lncRNA gene Chr13:78769170-78848868 (+)
A/J MGP_AJ_G0003177
 antisense lncRNA gene Chr13:76074736-76158100 (+)
AKR/J MGP_AKRJ_G0003159
 antisense lncRNA gene Chr13:78384530-78467194 (+)
BALB/cJ MGP_BALBcJ_G0003164
 antisense lncRNA gene Chr13:76598803-76672835 (+)
C3H/HeJ MGP_C3HHeJ_G0003120
 antisense lncRNA gene Chr13:78054336-78133641 (+)
C57BL/6NJ MGP_C57BL6NJ_G0003307
 antisense lncRNA gene Chr13:81411872-81504753 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0002834
 antisense lncRNA gene Chr13:72730018-72807485 (+)
CAST/EiJ MGP_CASTEiJ_G0003087
 antisense lncRNA gene Chr13:77157400-77242692 (+)
CBA/J MGP_CBAJ_G0003117
 antisense lncRNA gene Chr13:84474007-84592393 (+)
DBA/2J MGP_DBA2J_G0003122
 antisense lncRNA gene Chr13:75772909-75856421 (+)
FVB/NJ MGP_FVBNJ_G0003140
 antisense lncRNA gene Chr13:74866501-74952413 (+)
LP/J MGP_LPJ_G0003198
 antisense lncRNA gene Chr13:79037002-79125684 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0003131
 antisense lncRNA gene Chr13:82957081-83041493 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0003308
 antisense lncRNA gene Chr13:77721836-77804922 (+)
PWK/PhJ MGP_PWKPhJ_G0003044
 antisense lncRNA gene Chr13:74669504-74747018 (+)
SPRET/EiJ MGP_SPRETEiJ_G0002991
 antisense lncRNA gene Chr13:74003711-74082791 (+)
WSB/EiJ MGP_WSBEiJ_G0003120
 antisense lncRNA gene Chr13:78175463-78259066 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
  • All Mutations and Alleles
    2
  • Chemically induced (other)
    1
  • Gene trapped
    1
  • Genomic Mutations
    1 involving A830082K12Rik
  • Find Mice (IMSR)
    0 strains or lines available
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    750
  • Tissues
    39
  • cDNA Data
    7
  • Literature Summary
    2
Sequences &
Gene Models
less
  • All Sequences
    38
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 320174 NCBI Gene Model | MGI Sequence Detail 38548 C57BL/6J ±  kb
transcript NR_045195 RefSeq | MGI Sequence Detail 2305 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 9
    cDNA 7
    Primer pair 2

    Microarray probesets 3
References
more
  • Summaries
    All 16
    Developmental Gene Expression 2
    Gene Ontology 1
    Phenotypes 4
  • Earliest
    J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
  • Latest
    J:301382 Hezroni H, et al., Regulation of neuronal commitment in mouse embryonic stem cells by the Reno1/Bahcc1 locus. EMBO Rep. 2020 Nov 5;21(11):e51264
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory