4921529L05Rik Gene Detail

Summary

• Symbol
  4921529L05Rik
• Name
  RIKEN cDNA 4921529L05 gene
• Synonyms
  4930590G02Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:2443531
  NCBI Gene: 320178
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr6:53955676-53995015 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1454 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2443531	lncRNA gene	Chr6:53955676-53995015 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015632	unclassified non-coding RNA gene	Chr6:53315140-53355422 (+)
A/J	MGP_AJ_G0015608	unclassified non-coding RNA gene	Chr6:50834997-50874490 (+)
AKR/J	MGP_AKRJ_G0015571	unclassified non-coding RNA gene	Chr6:52567085-52605815 (+)
BALB/cJ	MGP_BALBcJ_G0015570	unclassified non-coding RNA gene	Chr6:51187995-51226761 (+)
C3H/HeJ	MGP_C3HHeJ_G0015392	unclassified non-coding RNA gene	Chr6:52585566-52626706 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0016023	unclassified non-coding RNA gene	Chr6:54498553-54542536 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013757	unclassified non-coding RNA gene	Chr6:48453475-48485864 (+)
CAST/EiJ	MGP_CASTEiJ_G0014948	unclassified non-coding RNA gene	Chr6:52423550-52467553 (+)
CBA/J	MGP_CBAJ_G0015373	unclassified non-coding RNA gene	Chr6:56749083-56789824 (+)
DBA/2J	MGP_DBA2J_G0015467	unclassified non-coding RNA gene	Chr6:50742440-50781648 (+)
FVB/NJ	MGP_FVBNJ_G0015474	unclassified non-coding RNA gene	Chr6:50329273-50368114 (+)
LP/J	MGP_LPJ_G0015548	unclassified non-coding RNA gene	Chr6:53264403-53303196 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015497	unclassified non-coding RNA gene	Chr6:59299459-59340221 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016065	unclassified non-coding RNA gene	Chr6:52511018-52552854 (+)
PWK/PhJ	MGP_PWKPhJ_G0014732	unclassified non-coding RNA gene	Chr6:50384128-50425345 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014521	unclassified non-coding RNA gene	Chr6:51883192-51924447 (+)
WSB/EiJ	MGP_WSBEiJ_G0015052	unclassified non-coding RNA gene	Chr6:52534706-52576797 (+)

Homology

• Gene Tree
  4921529L05Rik
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1

• Ensembl
  ENSMUSG00000108060 (Evidence)
• NCBI Gene
  320178

Representative Sequences			Length	Strain/Species
genomic	320178	NCBI Gene Model | MGI Sequence Detail	39340	C57BL/6J
transcript	NR_110484	RefSeq | MGI Sequence Detail	2165	ZRU/MplStud

Molecular
Reagents

• All nucleic 3

  cDNA 3

Other
Accession IDs

MGI:1923124

References

• Summaries
  All 8
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 4921529L05Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr56578	Chr6:53955681-53955700 (+)	15 bp
Tssr56579	Chr6:53955707-53955715 (+)	35 bp