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E230001N04Rik Gene Detail
Summary
  • Symbol
    E230001N04Rik
  • Name
    RIKEN cDNA E230001N04 gene
  • Synonyms
    Lnc956
  • Feature Type
    lncRNA gene
  • IDs
    MGI:2443549
    NCBI Gene: 320187
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr17:28741690-28744372 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 17, 14.73 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    103 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2443549
 lncRNA gene Chr17:28740816-28744372 (+)
129S1/SvImJ MGP_129S1SvImJ_G0005710
 lincRNA gene Chr17:27936473-27938563 (+)
A/J MGP_AJ_G0005699
 lincRNA gene Chr17:27006868-27008958 (+)
AKR/J MGP_AKRJ_G0005678
 lincRNA gene Chr17:27215158-27217248 (+)
BALB/cJ MGP_BALBcJ_G0005679
 lincRNA gene Chr17:27278296-27280386 (+)
C3H/HeJ MGP_C3HHeJ_G0005626
 lincRNA gene Chr17:27602216-27604306 (+)
C57BL/6NJ MGP_C57BL6NJ_G0005837
 lincRNA gene Chr17:29066479-29068569 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0005190
 lincRNA gene Chr17:24375440-24377532 (+)
CAST/EiJ MGP_CASTEiJ_G0005568
 lincRNA gene Chr17:27582691-27584780 (+)
CBA/J MGP_CBAJ_G0005614
 lincRNA gene Chr17:30108567-30110657 (+)
DBA/2J MGP_DBA2J_G0005632
 lincRNA gene Chr17:26565269-26567359 (+)
FVB/NJ MGP_FVBNJ_G0005658
 lincRNA gene Chr17:26379267-26381357 (+)
LP/J MGP_LPJ_G0005713
 lincRNA gene Chr17:28196602-28198692 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0005643
 lincRNA gene Chr17:29526952-29529041 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0005837
 lincRNA gene Chr17:27655075-27657165 (+)
PWK/PhJ MGP_PWKPhJ_G0005514
 lincRNA gene Chr17:25383707-25385799 (+)
SPRET/EiJ MGP_SPRETEiJ_G0005433
 lincRNA gene Chr17:25634251-25636307 (+)
WSB/EiJ MGP_WSBEiJ_G0005620
 lincRNA gene Chr17:27643810-27645900 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    5
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    8
Sequences &
Gene Models
less
  • All Sequences
    30
  • RefSeq
    1
  • UniProt
    2
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000066170 Ensembl Gene Model | MGI Sequence Detail 2683 C57BL/6J ±  kb
transcript ENSMUST00000181029 Ensembl | MGI Sequence Detail 2683 Not Applicable  
polypeptide Q3U5G7 UniProt | EBI | MGI Sequence Detail 143 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
Molecular
Reagents
less
  • All nucleic 8
    cDNA 8

    Microarray probesets 1
References
more
  • Summaries
    All 17
    Gene Ontology 1
    Phenotypes 3
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:333158 Ma H, et al., Lnc956 regulates mouse embryonic stem cell differentiation in response to DNA damage in a p53-independent pathway. Sci Adv. 2023 Jan 20;9(3):eade9742
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory