Mir9-2hg MGI Mouse Gene Detail - MGI:2443574

Symbol

Mir9-2hg
Name

Mir9-2 host gene
Synonyms

2810449C10Rik, C130071C03Rik, C130071C03Riken, NDIME

Feature Type

lncRNA gene
IDs

MGI:2443574
NCBI Gene: 320203
Alliance

gene page
Transcription Start Sites

16 TSS

Sequence Map

Chr13:83869500-83889427 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 13, 43.68 cM
Mapping Data

1 experiment

SNPs within 2kb

331 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2443574	lncRNA gene	Chr13:83863381-84100589 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0005486	lincRNA gene	Chr13:84576387-84755712 (+)
A/J	MGP_AJ_G0005472	lincRNA gene	Chr13:81615919-81776044 (+)
AKR/J	MGP_AKRJ_G0005451	lincRNA gene	Chr13:84059896-84221934 (+)
BALB/cJ	MGP_BALBcJ_G0005453	lincRNA gene	Chr13:82174470-82339201 (+)
C3H/HeJ	MGP_C3HHeJ_G0005401	lincRNA gene	Chr13:83760748-83919873 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005609	lincRNA gene	Chr13:87278852-87457598 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004983	lincRNA gene	Chr13:77978622-78139934 (+)
CAST/EiJ	MGP_CASTEiJ_G0005343	lincRNA gene	Chr13:82839109-83019063 (+)
CBA/J	MGP_CBAJ_G0005390	lincRNA gene	Chr13:90589629-90783796 (+)
DBA/2J	MGP_DBA2J_G0005406	lincRNA gene	Chr13:81283314-81444932 (+)
FVB/NJ	MGP_FVBNJ_G0005432	lincRNA gene	Chr13:80322350-80486279 (+)
LP/J	MGP_LPJ_G0005489	lincRNA gene	Chr13:84815151-84987964 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005415	lincRNA gene	Chr13:89848620-90045237 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005609	lincRNA gene	Chr13:83422433-83606506 (+)
PWK/PhJ	MGP_PWKPhJ_G0005294	lincRNA gene	Chr13:80178544-80350313 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0005213	lincRNA gene	Chr13:79750366-79923073 (+)
WSB/EiJ	MGP_WSBEiJ_G0005393	lincRNA gene	Chr13:83889471-84066311 (+)

Human Ortholog

MIR9-2HG, MIR9-2 host gene

Vertebrate Orthologs

1

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

MIR9-2HG, MIR9-2 host gene
Synonyms

ECONEXIN, EyeLinc1, LINC00461, LINC02060, NDIME, VISC
Links

HGNC:42810

NCBI Gene ID: 645323
Chr Location

5q14.3; chr5:88507546-88691057 (-) GRCh38

MGI Vertebrate Homology

Mir9-2hg stringent orthology
1 human;1 mouse
HCOP

vertebrate homology predictions: MIR9-2HG
Gene Tree

Mir9-2hg

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Phenotype Summary

1 phenotype from 1 allele in 1 genetic background
6 phenotype references

All Mutations and Alleles

3
Chemically induced (other)

1
Gene trapped

1
Targeted

1
Genomic Mutations

1 involving Mir9-2hg
Find Mice (IMSR)

0 strains or lines available

Mice homozygous for a targeted allele exhibit normal anatomy and behavior.

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

992
Tissues

185
cDNA Data

12
Literature Summary

10

Images

Tissue x Stage Matrix

Other Mouse Links

Allen Institute

GEO

Expression Atlas

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All Sequences

75
RefSeq

4
UniProt

1

Ensembl

ENSMUSG00000050334 (Evidence)
NCBI Gene

320203

			Length	Strain/Species	Flank
genomic	320203	NCBI Gene Model \| MGI Sequence Detail	19928	C57BL/6J	± kb
transcript	NR_152244	RefSeq \| MGI Sequence Detail	3668	C57BL/6
polypeptide	Q8BH22	UniProt \| EBI \| MGI Sequence Detail	100	Not Applicable

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UniProt

1 Sequence

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All nucleic 28

cDNA 12

Primer pair 13

Other 3

Microarray probesets 5

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MGI:1920008, MGI:7513866

Summaries

All 34

Developmental Gene Expression 10

Phenotypes 6
Earliest

J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
Latest

J:301383 Bai M, et al., Critical regulation of a NDIME/MEF2C axis in embryonic stem cell neural differentiation and autism. EMBO Rep. 2020 Nov 5;21(11):e50283

TSS for Mir9-2hg:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr120521	Chr13:83869401-83869404 (+)	-97 bp
Tssr120522	Chr13:83869409-83869428 (+)	-81 bp
Tssr120523	Chr13:83869448-83869463 (+)	-44 bp
Tssr120524	Chr13:83869476-83869503 (+)	-10 bp
Tssr4133	Chr13:83869515-83869520 (+)	18 bp
Tssr120525	Chr13:83875466-83875477 (+)	5,972 bp
Tssr120526	Chr13:83875489-83875506 (+)	5,998 bp
Tssr120527	Chr13:83877576-83877587 (+)	8,082 bp
Tssr120528	Chr13:83877594-83877613 (+)	8,104 bp
Tssr120529	Chr13:83879497-83879513 (+)	10,005 bp
Tssr120530	Chr13:83880486-83880489 (+)	10,988 bp
Tssr120531	Chr13:83880557-83880584 (+)	11,071 bp
Tssr120532	Chr13:83880682-83880693 (+)	11,188 bp
Tssr120534	Chr13:83887168-83887184 (+)	17,676 bp
Tssr120535	Chr13:83887303-83887308 (+)	17,806 bp
Tssr120536	Chr13:83888307-83888320 (+)	18,814 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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