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Fubp3 Gene Detail
Summary
  • Symbol
    Fubp3
  • Name
    far upstream element (FUSE) binding protein 3
  • Synonyms
    A330051M14Rik, FBP3, Marta2
  • Feature Type
    protein coding gene
  • IDs
    MGI:2443699
    NCBI Gene: 320267
  • Alliance
    gene page
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:31462663-31507538 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 21.84 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    743 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2443699
 protein coding gene Chr2:31462655-31507538 (+)
129S1/SvImJ MGP_129S1SvImJ_G0025586
 protein coding gene Chr2:29922265-29971377 (+)
A/J MGP_AJ_G0025564
 protein coding gene Chr2:28690203-28735720 (+)
AKR/J MGP_AKRJ_G0025533
 protein coding gene Chr2:29661826-29706623 (+)
BALB/cJ MGP_BALBcJ_G0025560
 protein coding gene Chr2:28820454-28865286 (+)
C3H/HeJ MGP_C3HHeJ_G0025321
 protein coding gene Chr2:29594810-29640502 (+)
C57BL/6NJ MGP_C57BL6NJ_G0026005
 protein coding gene Chr2:30863386-30909200 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0023413
 protein coding gene Chr2:27448666-27492098 (+)
CAST/EiJ MGP_CASTEiJ_G0024783
 protein coding gene Chr2:29540695-29585588 (+)
CBA/J MGP_CBAJ_G0025298
 protein coding gene Chr2:31969830-32014647 (+)
DBA/2J MGP_DBA2J_G0025431
 protein coding gene Chr2:28464181-28509764 (+)
FVB/NJ MGP_FVBNJ_G0025394
 protein coding gene Chr2:28322528-28367502 (+)
LP/J MGP_LPJ_G0025517
 protein coding gene Chr2:29820331-29866241 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0025424
 protein coding gene Chr2:31730127-31774828 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0026063
 protein coding gene Chr2:29591863-29638738 (+)
PWK/PhJ MGP_PWKPhJ_G0024530
 protein coding gene Chr2:28359106-28405273 (+)
SPRET/EiJ MGP_SPRETEiJ_G0024330
 protein coding gene Chr2:29734627-29783189 (+)
WSB/EiJ MGP_WSBEiJ_G0024851
 protein coding gene Chr2:29760884-29805676 (+)



Homology
more
  • Human Ortholog
    FUBP3, far upstream element binding protein 3
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    FUBP3, far upstream element binding protein 3
  • Synonyms
    FBP3
  • Links
    NCBI Gene ID: 8939
    neXtProt AC: NX_Q96I24
    UniProt: Q96I24

  • Chr Location
    9q34.11-q34.12; chr9:130578965-130638352 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    12 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    16
  • GO References
    4
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    863
  • Tissues
    106
  • cDNA Data
    65
  • Literature Summary
    3
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000026843 Ensembl Gene Model | MGI Sequence Detail 44876 C57BL/6J ±  kb
transcript ENSMUST00000055244 Ensembl | MGI Sequence Detail 3648 Not Applicable  
polypeptide ENSMUSP00000053474 Ensembl | MGI Sequence Detail 575 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    12 Sequences
  • InterPro Domains
    IPR015096 Far upstream element-binding protein, C-terminal
    IPR004087 K Homology domain
    IPR004088 K Homology domain, type 1
    IPR036612 K Homology domain, type 1 superfamily
  • GlyGen
    A2AJ72 1 site, 1 O-linked glycan (1 site)
Molecular
Reagents
less
  • All nucleic 67
    cDNA 65
    Primer pair 2

    Microarray probesets 3
Other
Accession IDs
less
MGI:2139232
References
more
  • Summaries
    All 38
    Developmental Gene Expression 3
    Gene Ontology 4
    Phenotypes 12
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:327302 Yao Q, et al., Lnc-EST12, which is negatively regulated by mycobacterial EST12, suppresses antimycobacterial innate immunity through its interaction with FUBP3. Cell Mol Immunol. 2022 Aug;19(8):883-897
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory