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Clba1 Gene Detail
Summary
  • Symbol
    Clba1
  • Name
    clathrin binding box of aftiphilin containing 1
  • Synonyms
    BC022687, C130001I08Rik, Flj20080
  • Feature Type
    protein coding gene
  • IDs
    MGI:2443738
    NCBI Gene: 217887
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr12:112772595-112779865 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 12, 61.20 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    313 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2443738
 protein coding gene Chr12:112772557-112779872 (+)
129S1/SvImJ MGP_129S1SvImJ_G0020161
 protein coding gene Chr12:115278778-115286047 (+)
A/J MGP_AJ_G0020117
 protein coding gene Chr12:110831583-110838861 (+)
AKR/J MGP_AKRJ_G0020092
 protein coding gene Chr12:114034157-114041418 (+)
BALB/cJ MGP_BALBcJ_G0020102
 protein coding gene Chr12:111278602-111286227 (+)
C3H/HeJ MGP_C3HHeJ_G0019904
 protein coding gene Chr12:114544165-114551892 (+)
C57BL/6NJ MGP_C57BL6NJ_G0020547
 protein coding gene Chr12:118847198-118854466 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0018161
 protein coding gene Chr12:107264572-107272113 (+)
CAST/EiJ MGP_CASTEiJ_G0019444
 protein coding gene Chr12:109387920-109395223 (+)
CBA/J MGP_CBAJ_G0019871
 protein coding gene Chr12:123384404-123391665 (+)
DBA/2J MGP_DBA2J_G0019988
 protein coding gene Chr12:110318270-110325389 (+)
FVB/NJ MGP_FVBNJ_G0019973
 protein coding gene Chr12:109153479-109161254 (+)
LP/J MGP_LPJ_G0020062
 protein coding gene Chr12:115106489-115114824 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0020011
 protein coding gene Chr12:126473002-126480280 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0020576
 protein coding gene Chr12:113562153-113569453 (+)
PWK/PhJ MGP_PWKPhJ_G0019206
 protein coding gene Chr12:104974658-104982005 (+)
SPRET/EiJ MGP_SPRETEiJ_G0019010
 protein coding gene Chr12:107732024-107740372 (+)
WSB/EiJ MGP_WSBEiJ_G0019504
 protein coding gene Chr12:114470780-114479628 (+)



Homology
more
  • Human Ortholog
    CLBA1, clathrin binding box of aftiphilin containing 1
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CLBA1, clathrin binding box of aftiphilin containing 1
  • Synonyms
    C14orf79
  • Links
    NCBI Gene ID: 122616
    neXtProt AC: NX_Q96F83
    UniProt: Q96F83

  • Chr Location
    14q32.33; chr14:104985775-105010482 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    7
  • GO References
    2
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    16
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 217887 NCBI Gene Model | MGI Sequence Detail 7271 C57BL/6J ±  kb
transcript NM_145450 RefSeq | MGI Sequence Detail 1915 ZRU/MplStud  
polypeptide Q8BHN9 UniProt | EBI | MGI Sequence Detail 321 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 16
    cDNA 16

    Microarray probesets 5
Other
Accession IDs
less
MGI:2144997, MGI:6156357
References
more
  • Summaries
    All 28
    Gene Ontology 2
    Phenotypes 5
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory