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Scart1 Gene Detail
Summary
  • Symbol
    Scart1
  • Name
    scavenger receptor family member expressed on T cells 1
  • Synonyms
    Cd163l1, E430002D04Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2443796
    NCBI Gene: 244233
  • Alliance
    gene page
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr7:139798180-139811058 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 7, 85.26 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    429 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2443796
 protein coding gene Chr7:139777131-139811058 (+)
129S1/SvImJ MGP_129S1SvImJ_G0033171
 protein coding gene Chr7:145315317-145327999 (+)
A/J MGP_AJ_G0033153
 protein coding gene Chr7:141167605-141180289 (+)
AKR/J MGP_AKRJ_G0033085
 protein coding gene Chr7:145018315-145030998 (+)
BALB/cJ MGP_BALBcJ_G0033154
 protein coding gene Chr7:140903768-140916440 (+)
C3H/HeJ MGP_C3HHeJ_G0032868
 protein coding gene Chr7:144819385-144832095 (+)
C57BL/6NJ MGP_C57BL6NJ_G0033665
 protein coding gene Chr7:150649272-150661938 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0030638
 protein coding gene Chr7:142297583-142310647 (+)
CAST/EiJ MGP_CASTEiJ_G0032198
 protein coding gene Chr7:137130278-137144788 (+)
CBA/J MGP_CBAJ_G0032841
 protein coding gene Chr7:155727719-155742467 (+)
DBA/2J MGP_DBA2J_G0032993
 protein coding gene Chr7:139134252-139146910 (+)
FVB/NJ MGP_FVBNJ_G0032946
 protein coding gene Chr7:139027772-139040394 (+)
LP/J MGP_LPJ_G0033087
 protein coding gene Chr7:146850894-146863550 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0032978
 protein coding gene Chr7:156386394-156399042 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0033685
 protein coding gene Chr7:144028871-144043511 (+)
PWK/PhJ MGP_PWKPhJ_G0031904
 protein coding gene Chr7:132318706-132331652 (+)
SPRET/EiJ MGP_SPRETEiJ_G0031749
 protein coding gene Chr7:130854168-130866564 (+)
WSB/EiJ MGP_WSBEiJ_G0032309
 protein coding gene Chr7:144917152-144931309 (+)



Homology
more
  • Human Ortholog
    SCART1, scavenger receptor family member expressed on T cells 1
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SCART1, scavenger receptor family member expressed on T cells 1
  • Links
    NCBI Gene ID: 619207
    UniProt: Q4G0T1

  • Chr Location
    10q26.3; chr10:133453928-133523558 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    7 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    3
  • GO References
    2
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    3
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000025461 Ensembl Gene Model | MGI Sequence Detail 12879 C57BL/6J ±  kb
transcript ENSMUST00000209398 Ensembl | MGI Sequence Detail 3437 Not Applicable  
polypeptide ENSMUSP00000147864 Ensembl | MGI Sequence Detail 991 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    3 Sequences
  • InterPro Domains
    IPR052291 Scavenger receptor cysteine-rich domain-containing protein
    IPR001190 SRCR domain
    IPR017448 SRCR-like domain
    IPR036772 SRCR-like domain superfamily
Molecular
Reagents
less
  • All nucleic 3
    cDNA 3

    Microarray probesets 3
Other
Accession IDs
less
MGI:6455763
References
more
  • Summaries
    All 25
    Gene Ontology 2
    Phenotypes 7
  • Earliest
    J:65007 Cattanach BM, et al., Two imprinted gene mutations: three phenotypes. Hum Mol Genet. 2000 Sep 22;9(15):2263-73
  • Latest
    J:160625 Fink DR, et al., Elevated numbers of SCART1+ gammadelta T cells in skin inflammation and inflammatory bowel disease. Mol Immunol. 2010 May;47(9):1710-8
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory