A230103J11Rik Gene Detail

Summary

• Symbol
  A230103J11Rik
• Name
  RIKEN cDNA A230103J11 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2444082
  NCBI Gene: 320466
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr8:85779789-85787089 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 41.53 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  209 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2444082	lncRNA gene	Chr8:85779073-85787089 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015720	unclassified non-coding RNA gene	Chr8:85998655-86007229 (-)
A/J	MGP_AJ_G0015698	unclassified non-coding RNA gene	Chr8:82600751-82607871 (-)
AKR/J	MGP_AKRJ_G0015661	unclassified non-coding RNA gene	Chr8:85058973-85066094 (-)
BALB/cJ	MGP_BALBcJ_G0015659	unclassified non-coding RNA gene	Chr8:82737167-82744458 (-)
C3H/HeJ	MGP_C3HHeJ_G0015481	unclassified non-coding RNA gene	Chr8:85677613-85684764 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0016114	unclassified non-coding RNA gene	Chr8:89289615-89296870 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013842	unclassified non-coding RNA gene	Chr8:76403998-76411776 (-)
CAST/EiJ	MGP_CASTEiJ_G0015036	unclassified non-coding RNA gene	Chr8:85107782-85116161 (-)
CBA/J	MGP_CBAJ_G0015462	unclassified non-coding RNA gene	Chr8:92322243-92329363 (-)
DBA/2J	MGP_DBA2J_G0015558	unclassified non-coding RNA gene	Chr8:82240475-82247595 (-)
FVB/NJ	MGP_FVBNJ_G0015564	unclassified non-coding RNA gene	Chr8:81199488-81206940 (-)
LP/J	MGP_LPJ_G0015638	unclassified non-coding RNA gene	Chr8:86102835-86110126 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015586	unclassified non-coding RNA gene	Chr8:94882677-94890873 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016156	unclassified non-coding RNA gene	Chr8:85044850-85054902 (-)
PWK/PhJ	MGP_PWKPhJ_G0014817	unclassified non-coding RNA gene	Chr8:81486381-81494311 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014606	unclassified non-coding RNA gene	Chr8:83855906-83874457 (-)
WSB/EiJ	MGP_WSBEiJ_G0015140	unclassified non-coding RNA gene	Chr8:85472103-85481028 (-)

Homology

• Gene Tree
  A230103J11Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  34 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Gene trapped
  2
• Radiation induced
  1
• Genomic Mutations
  2 involving A230103J11Rik
• Find Mice (IMSR)
  4 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  2

• Ensembl
  ENSMUSG00000087026 (Evidence)
• NCBI Gene
  320466

Representative Sequences			Length	Strain/Species
genomic	320466	NCBI Gene Model | MGI Sequence Detail	7301	C57BL/6J
transcript	NR_110581	RefSeq | MGI Sequence Detail	2132	C57BL/6

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 40

  Phenotypes 34
• Earliest
  J:13049 Gruneberg H, Genetical studies on the skeleton of the mouse. XVIII. Three genes for syndactylism. J Genet. 1956;54(1):113-145
• Latest
  J:348117 Okuma H, et al., N-terminal domain on dystroglycan enables LARGE1 to extend matriglycan on alpha-dystroglycan and prevents muscular dystrophy. Elife. 2023 Feb 1;12

TSS for A230103J11Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr82239	Chr8:85787067-85787097 (-)	7 bp
Tssr2632	Chr8:85787049-85787066 (-)	31 bp