D230022J07Rik Gene Detail

Summary

• Symbol
  D230022J07Rik
• Name
  RIKEN cDNA D230022J07 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2444095
  NCBI Gene: 320471
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:73217314-73250842 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 43.64 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  925 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2444095	lncRNA gene	Chr2:73217314-73250842 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015428	unclassified non-coding RNA gene	Chr2:73661907-73695320 (+)
A/J	MGP_AJ_G0015403	unclassified non-coding RNA gene	Chr2:70766734-70800197 (+)
AKR/J	MGP_AKRJ_G0015367	unclassified non-coding RNA gene	Chr2:72711872-72746681 (+)
BALB/cJ	MGP_BALBcJ_G0015367	unclassified non-coding RNA gene	Chr2:70958532-70991989 (+)
C3H/HeJ	MGP_C3HHeJ_G0015191	unclassified non-coding RNA gene	Chr2:72897301-72930824 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015821	unclassified non-coding RNA gene	Chr2:75854264-75890055 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013561	unclassified non-coding RNA gene	Chr2:67968679-68002796 (+)
CAST/EiJ	MGP_CASTEiJ_G0014742	unclassified non-coding RNA gene	Chr2:73163405-73199896 (+)
CBA/J	MGP_CBAJ_G0015170	unclassified non-coding RNA gene	Chr2:78617815-78651574 (+)
DBA/2J	MGP_DBA2J_G0015265	unclassified non-coding RNA gene	Chr2:70367012-70400441 (+)
FVB/NJ	MGP_FVBNJ_G0015272	unclassified non-coding RNA gene	Chr2:69778880-69813467 (+)
LP/J	MGP_LPJ_G0015345	unclassified non-coding RNA gene	Chr2:73535475-73570194 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015298	unclassified non-coding RNA gene	Chr2:80554476-80589419 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015860	unclassified non-coding RNA gene	Chr2:72795478-72829936 (+)
PWK/PhJ	MGP_PWKPhJ_G0014530	unclassified non-coding RNA gene	Chr2:70287066-70320818 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014318	unclassified non-coding RNA gene	Chr2:73030355-73064961 (+)
WSB/EiJ	MGP_WSBEiJ_G0014849	unclassified non-coding RNA gene	Chr2:73246038-73280778 (+)

Homology

• Gene Tree
  D230022J07Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  13 phenotype references
  

• All Mutations and Alleles
  7
• Chemically induced (other)
  1
• Targeted
  6
• Genomic Mutations
  7 involving D230022J07Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000087176 (Evidence)
• NCBI Gene
  320471

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087176	Ensembl Gene Model | MGI Sequence Detail	33529	C57BL/6J
transcript	ENSMUST00000144735	Ensembl | MGI Sequence Detail	1062	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 18

  Phenotypes 13
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:239094 Schep R, et al., Control of Hoxd gene transcription in the mammary bud by hijacking a preexisting regulatory landscape. Proc Natl Acad Sci U S A. 2016 Nov 29;113(48):E7720-E7729