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3222401L13Rik Gene Detail
Summary
  • Symbol
    3222401L13Rik
  • Name
    RIKEN cDNA 3222401L13 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:2444186
    NCBI Gene: 105246409
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr18:37788504-37794795 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 18, 19.54 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    220 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2444186
 lncRNA gene Chr18:37788504-37794795 (+)
129S1/SvImJ MGP_129S1SvImJ_G0005784
 lincRNA gene Chr18:36058086-36064375 (+)
A/J MGP_AJ_G0005773
 lincRNA gene Chr18:34818766-34825078 (+)
AKR/J MGP_AKRJ_G0005750
 lincRNA gene Chr18:35778799-35785086 (+)
BALB/cJ MGP_BALBcJ_G0005752
 lincRNA gene Chr18:34888541-34894852 (+)
C3H/HeJ MGP_C3HHeJ_G0005700
 lincRNA gene Chr18:35842111-35848407 (+)
C57BL/6NJ MGP_C57BL6NJ_G0005913
 lincRNA gene Chr18:37349519-37355810 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0005256
 lincRNA gene Chr18:34839391-34845763 (+)
CAST/EiJ MGP_CASTEiJ_G0005642
 lincRNA gene Chr18:35781005-35787264 (+)
CBA/J MGP_CBAJ_G0005687
 lincRNA gene Chr18:38445606-38451928 (+)
DBA/2J MGP_DBA2J_G0005705
 lincRNA gene Chr18:34417952-34424313 (+)
FVB/NJ MGP_FVBNJ_G0005732
 lincRNA gene Chr18:34133172-34139461 (+)
LP/J MGP_LPJ_G0005786
 lincRNA gene Chr18:36133190-36139478 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0005718
 lincRNA gene Chr18:39732555-39739568 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0005912
 lincRNA gene Chr18:35633655-35639946 (+)
PWK/PhJ MGP_PWKPhJ_G0005586
 lincRNA gene Chr18:34627155-34633449 (+)
SPRET/EiJ MGP_SPRETEiJ_G0005502
 lincRNA gene Chr18:35861457-35867707 (+)
WSB/EiJ MGP_WSBEiJ_G0005693
 lincRNA gene Chr18:35531358-35537648 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    8
Sequences &
Gene Models
less
  • All Sequences
    29
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000073590 Ensembl Gene Model | MGI Sequence Detail 6292 C57BL/6J ±  kb
transcript ENSMUST00000192137 Ensembl | MGI Sequence Detail 6292 Not Applicable  
polypeptide Q3UEV8 UniProt | EBI | MGI Sequence Detail 97 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 8
    cDNA 8

    Microarray probesets 3
References
more
  • Summaries
    All 14
    Phenotypes 2
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:313451 Xu L, et al., Abnormal neocortex arealization and Sotos-like syndrome-associated behavior in Setd2 mutant mice. Sci Adv. 2021 Jan;7(1)
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory