D830050J10Rik Gene Detail

Summary

• Symbol
  D830050J10Rik
• Name
  RIKEN cDNA D830050J10 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2444203
  NCBI Gene: 352968
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr6:115652929-115654741 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 53.65 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  88 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2444203	lncRNA gene	Chr6:115652929-115655328 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004761	bidirectional promoter lncRNA gene	Chr6:118312608-118314420 (+)
A/J	MGP_AJ_G0004742	bidirectional promoter lncRNA gene	Chr6:113767581-113769393 (+)
AKR/J	MGP_AKRJ_G0004722	bidirectional promoter lncRNA gene	Chr6:116830617-116832423 (+)
BALB/cJ	MGP_BALBcJ_G0004724	bidirectional promoter lncRNA gene	Chr6:113580847-113582659 (+)
C3H/HeJ	MGP_C3HHeJ_G0004670	bidirectional promoter lncRNA gene	Chr6:67471877-67473683 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0004874	bidirectional promoter lncRNA gene	Chr6:121331333-121333145 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004312	bidirectional promoter lncRNA gene	Chr6:110777882-110779681 (+)
CAST/EiJ	MGP_CASTEiJ_G0004626	bidirectional promoter lncRNA gene	Chr6:117189512-117191325 (+)
CBA/J	MGP_CBAJ_G0004665	bidirectional promoter lncRNA gene	Chr6:126086324-126088130 (+)
DBA/2J	MGP_DBA2J_G0004683	bidirectional promoter lncRNA gene	Chr6:112696917-112698729 (+)
FVB/NJ	MGP_FVBNJ_G0004702	bidirectional promoter lncRNA gene	Chr6:111873359-111875170 (+)
LP/J	MGP_LPJ_G0004762	bidirectional promoter lncRNA gene	Chr6:118326583-118328395 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004687	bidirectional promoter lncRNA gene	Chr6:130277235-130279047 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004877	bidirectional promoter lncRNA gene	Chr6:116846517-116848329 (+)
PWK/PhJ	MGP_PWKPhJ_G0004579	bidirectional promoter lncRNA gene	Chr6:111706537-111708342 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004512	bidirectional promoter lncRNA gene	Chr6:115561877-115563689 (+)
WSB/EiJ	MGP_WSBEiJ_G0004671	bidirectional promoter lncRNA gene	Chr6:117109847-117111658 (+)

Homology

• Gene Tree
  D830050J10Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving D830050J10Rik
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1
• UniProt
  2

• Ensembl
  ENSMUSG00000107994 (Evidence)
• NCBI Gene
  352968

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107994	Ensembl Gene Model | MGI Sequence Detail	1813	C57BL/6J
transcript	ENSMUST00000203858	Ensembl | MGI Sequence Detail	1813	Not Applicable
polypeptide	Q8C6X7	UniProt | EBI | MGI Sequence Detail	196	Not Applicable

Protein
Information

• UniProt
  2 Sequences

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 1

References

• Summaries
  All 14

  Phenotypes 4
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:330636 Iwata S, et al., An efficient i-GONAD method for creating and maintaining lethal mutant mice using an inversion balancer identified from the C3H/HeJJcl strain. G3 (Bethesda). 2021;11(8)

TSS for D830050J10Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr58320	Chr6:115652905-115652917 (+)	-18 bp
Tssr58321	Chr6:115652944-115652965 (+)	26 bp
Tssr58322	Chr6:115653675-115653715 (+)	766 bp