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Ttc39a Gene Detail
Summary
  • Symbol
    Ttc39a
  • Name
    tetratricopeptide repeat domain 39A
  • Synonyms
    4922503N01Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2444350
    NCBI Gene: 230603
  • Alliance
    gene page
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:109263820-109301942 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 51.29 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1049 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2444350
 protein coding gene Chr4:109251344-109301942 (+)
129S1/SvImJ MGP_129S1SvImJ_G0028570
 protein coding gene Chr4:110183065-110221113 (+)
A/J MGP_AJ_G0028533
 protein coding gene Chr4:106213626-106251544 (+)
AKR/J MGP_AKRJ_G0028480
 protein coding gene Chr4:108858378-108896295 (+)
BALB/cJ MGP_BALBcJ_G0028552
 protein coding gene Chr4:106428230-106466065 (+)
C3H/HeJ MGP_C3HHeJ_G0028266
 protein coding gene Chr4:109604489-109643622 (+)
C57BL/6NJ MGP_C57BL6NJ_G0028992
 protein coding gene Chr4:114142496-114180497 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0026283
 protein coding gene Chr4:101509079-101549378 (+)
CAST/EiJ MGP_CASTEiJ_G0027702
 protein coding gene Chr4:107457228-107495299 (+)
CBA/J MGP_CBAJ_G0028235
 protein coding gene Chr4:117889462-117927566 (+)
DBA/2J MGP_DBA2J_G0028383
 protein coding gene Chr4:105835195-105873229 (+)
FVB/NJ MGP_FVBNJ_G0028351
 protein coding gene Chr4:104711484-104749488 (+)
LP/J MGP_LPJ_G0028484
 protein coding gene Chr4:110431219-110470041 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0028377
 protein coding gene Chr4:123070915-123109916 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0029028
 protein coding gene Chr4:109100784-109138788 (+)
PWK/PhJ MGP_PWKPhJ_G0027428
 protein coding gene Chr4:104124598-104162945 (+)
SPRET/EiJ MGP_SPRETEiJ_G0027252
 protein coding gene Chr4:106483998-106523584 (+)
WSB/EiJ MGP_WSBEiJ_G0027783
 protein coding gene Chr4:109281656-109320474 (+)



Homology
more
  • Human Ortholog
    TTC39A, tetratricopeptide repeat domain 39A
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TTC39A, tetratricopeptide repeat domain 39A
  • Synonyms
    C1orf34, DEME-6
  • Links
    NCBI Gene ID: 22996
    neXtProt AC: NX_Q5SRH9
    UniProt: Q5SRH9

  • Chr Location
    1p32.3; chr1:51287258-51345116 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotypes from 1 allele in 1 genetic background
    11 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    2
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    740
  • Tissues
    6
  • cDNA Data
    11
  • Literature Summary
    2
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000028555 Ensembl Gene Model | MGI Sequence Detail 38123 C57BL/6J ±  kb
    transcript ENSMUST00000106618 Ensembl | MGI Sequence Detail 1970 Not Applicable  
    polypeptide ENSMUSP00000102229 Ensembl | MGI Sequence Detail 578 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      5 Sequences
    • Protein Ontology
      PR:000031228 tetratricopeptide repeat protein 39A
      (term hierarchy)
    • InterPro Domains
      IPR019412 Inclusion body clearance protein Iml2/Tetratricopeptide repeat protein 39
      IPR011990 Tetratricopeptide-like helical domain superfamily
      IPR019734 Tetratricopeptide repeat
    Molecular
    Reagents
    less
    • All nucleic 11
      cDNA 11

      Microarray probesets 2
    References
    more
    • Summaries
      All 30
      Developmental Gene Expression 2
      Gene Ontology 2
      Phenotypes 11
    • Earliest
      J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    11/12/2024
    MGI 6.24     		The Jackson Laboratory