9230105E05Rik Gene Detail

Summary

• Symbol
  9230105E05Rik
• Name
  RIKEN cDNA 9230105E05 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2444388
  NCBI Gene: 320626
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:120225428-120228698 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 67.94 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  164 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2444388	lncRNA gene	Chr10:120225428-120228698 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002905	antisense lncRNA gene	Chr10:123551043-123554303 (+)
A/J	MGP_AJ_G0002882	antisense lncRNA gene	Chr10:118661950-118665147 (+)
AKR/J	MGP_AKRJ_G0002863	antisense lncRNA gene	Chr10:122200029-122203377 (+)
BALB/cJ	MGP_BALBcJ_G0002870	antisense lncRNA gene	Chr10:119049466-119052689 (+)
C3H/HeJ	MGP_C3HHeJ_G0002826	antisense lncRNA gene	Chr10:122399243-122402503 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003013	antisense lncRNA gene	Chr10:127736507-127739758 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002555	antisense lncRNA gene	Chr10:113012024-113015327 (+)
CAST/EiJ	MGP_CASTEiJ_G0002798	antisense lncRNA gene	Chr10:122723072-122726305 (+)
CBA/J	MGP_CBAJ_G0002822	antisense lncRNA gene	Chr10:132945624-132948889 (+)
DBA/2J	MGP_DBA2J_G0002829	antisense lncRNA gene	Chr10:117795410-117798676 (+)
FVB/NJ	MGP_FVBNJ_G0002848	antisense lncRNA gene	Chr10:116782106-116785378 (+)
LP/J	MGP_LPJ_G0002905	antisense lncRNA gene	Chr10:124100381-124103587 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002837	antisense lncRNA gene	Chr10:135543374-135546597 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003016	antisense lncRNA gene	Chr10:122202546-122205811 (+)
PWK/PhJ	MGP_PWKPhJ_G0002756	antisense lncRNA gene	Chr10:117897339-117900973 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002705	antisense lncRNA gene	Chr10:121098771-121101926 (+)
WSB/EiJ	MGP_WSBEiJ_G0002827	antisense lncRNA gene	Chr10:122447557-122450775 (+)

Homology

• Gene Tree
  9230105E05Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 9230105E05Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000090191 (Evidence)
• NCBI Gene
  320626

Representative Sequences			Length	Strain/Species
genomic	320626	NCBI Gene Model | MGI Sequence Detail	3271	C57BL/6J
transcript	NR_040626	RefSeq | MGI Sequence Detail	2250	C57BL/6

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 12

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 9230105E05Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr95998	Chr10:120224514-120224533 (+)	-904 bp