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C130089K02Rik Gene Detail
Summary
  • Symbol
    C130089K02Rik
  • Name
    RIKEN cDNA C130089K02 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:2444420
    NCBI Gene: 320637
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:51964706-51971665 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 3, Syntenic
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    300 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2444420
 lncRNA gene Chr3:51964706-51971665 (-)
129S1/SvImJ MGP_129S1SvImJ_G0001149
 unclassified gene Chr3:50560293-50567247 (-)
A/J MGP_AJ_G0001129
 unclassified gene Chr3:49080977-49087936 (-)
AKR/J MGP_AKRJ_G0001115
 unclassified gene Chr3:50050118-50057075 (-)
BALB/cJ MGP_BALBcJ_G0001122
 unclassified gene Chr3:48934533-48941492 (-)
C3H/HeJ MGP_C3HHeJ_G0001103
 unclassified gene Chr3:50280374-50287330 (-)
C57BL/6NJ MGP_C57BL6NJ_G0001237
 unclassified gene Chr3:52584097-52591056 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0000955
 unclassified gene Chr3:45698900-45705779 (-)
CAST/EiJ MGP_CASTEiJ_G0001086
 unclassified gene Chr3:50354906-50361946 (-)
CBA/J MGP_CBAJ_G0001094
 unclassified gene Chr3:54226423-54235722 (-)
DBA/2J MGP_DBA2J_G0001098
 unclassified gene Chr3:48678052-48685009 (-)
FVB/NJ MGP_FVBNJ_G0001109
 unclassified gene Chr3:47659624-47666578 (-)
LP/J MGP_LPJ_G0001157
 unclassified gene Chr3:51319686-51326640 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0001098
 unclassified gene Chr3:58391746-58398705 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0001228
 unclassified gene Chr3:49981692-49988647 (-)
PWK/PhJ MGP_PWKPhJ_G0001044
 unclassified gene Chr3:48340026-48347058 (-)
SPRET/EiJ MGP_SPRETEiJ_G0001020
 unclassified gene Chr3:49622248-49628342 (-)
WSB/EiJ MGP_WSBEiJ_G0001102
 unclassified gene Chr3:50082551-50089514 (-)



Homology
less
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    3
Sequences &
Gene Models
less
  • All Sequences
    22
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000104339 Ensembl Gene Model | MGI Sequence Detail 6960 C57BL/6J ±  kb
transcript AK038829 GenBank | ENA | DDBJ | MGI Sequence Detail 3426 C57BL/6J  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 3
    cDNA 3
References
more
  • Summaries
    All 5
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
10/29/2024
MGI 6.24 		The Jackson Laboratory