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C530043K16Rik Gene Detail
Summary
  • Symbol
    C530043K16Rik
  • Name
    RIKEN cDNA C530043K16 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:2444587
    NCBI Gene: 320715
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:66749805-66752913 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, Syntenic
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    193 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2444587
 lncRNA gene Chr5:66749805-66752913 (-)
129S1/SvImJ MGP_129S1SvImJ_G0001593
 unclassified gene Chr5:66333813-66336767 (-)
A/J MGP_AJ_G0001574
 unclassified gene Chr5:63839295-63842469 (-)
AKR/J MGP_AKRJ_G0001559
 unclassified gene Chr5:65890261-65893084 (-)
BALB/cJ MGP_BALBcJ_G0001570
 unclassified gene Chr5:64535947-64539001 (-)
C3H/HeJ MGP_C3HHeJ_G0001547
 unclassified gene Chr5:66209983-66213023 (-)
C57BL/6NJ MGP_C57BL6NJ_G0001688
 unclassified gene Chr5:69073826-69076897 (-)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0001521
 unclassified gene Chr5:65387836-65390912 (-)
CBA/J MGP_CBAJ_G0001538
 unclassified gene Chr5:71292069-71297441 (-)
DBA/2J MGP_DBA2J_G0001543
 unclassified gene Chr5:63863716-63866812 (-)
FVB/NJ MGP_FVBNJ_G0001550
 unclassified gene Chr5:63050262-63053263 (-)
LP/J MGP_LPJ_G0001597
 unclassified gene Chr5:66825912-66828874 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0001533
 unclassified gene Chr5:74112251-74116266 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0001676
 unclassified gene Chr5:65556506-65560871 (-)
PWK/PhJ MGP_PWKPhJ_G0001478
 unclassified gene Chr5:62884710-62887779 (-)
SPRET/EiJ MGP_SPRETEiJ_G0001447
 unclassified gene Chr5:64908363-64911143 (-)
WSB/EiJ MGP_WSBEiJ_G0001538
 unclassified gene Chr5:65783759-65786579 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    17 phenotype references
  • All Mutations and Alleles
    4
  • Chemically induced (other)
    2
  • Radiation induced
    1
  • Spontaneous
    1
  • Genomic Mutations
    4 involving C530043K16Rik
  • Find Mice (IMSR)
    0 strains or lines available
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    728
  • Tissues
    2
  • cDNA Data
    6
  • Literature Summary
    1
Sequences &
Gene Models
less
  • All Sequences
    21
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000106706 Ensembl Gene Model | MGI Sequence Detail 3109 C57BL/6J ±  kb
transcript AK083074 GenBank | ENA | DDBJ | MGI Sequence Detail 3106 C57BL/6J  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 6
    cDNA 6
References
more
  • Summaries
    All 26
    Developmental Gene Expression 1
    Phenotypes 17
  • Earliest
    J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
10/29/2024
MGI 6.24 		The Jackson Laboratory