D130058E05Rik Gene Detail

Summary

• Symbol
  D130058E05Rik
• Name
  RIKEN cDNA D130058E05 gene

• Feature Type
  lncRNA gene
  BioType Conflict
  
• IDs
  MGI:2444614
  NCBI Gene: 102637806
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:89857938-89861910 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 45.06 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  107 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2444614	lncRNA gene	Chr1:89857930-89862331 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015108	unclassified non-coding RNA gene	Chr1:91395806-91398861 (+)
A/J	MGP_AJ_G0015081	unclassified non-coding RNA gene	Chr1:88128493-88131548 (+)
AKR/J	MGP_AKRJ_G0015044	unclassified non-coding RNA gene	Chr1:90728949-90732004 (+)
BALB/cJ	MGP_BALBcJ_G0015044	unclassified non-coding RNA gene	Chr1:88286798-88289854 (+)
C3H/HeJ	MGP_C3HHeJ_G0014867	unclassified non-coding RNA gene	Chr1:90945630-90948686 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015501	unclassified non-coding RNA gene	Chr1:94932182-94935239 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013247	unclassified non-coding RNA gene	Chr1:82408246-82411319 (+)
CAST/EiJ	MGP_CASTEiJ_G0014422	unclassified non-coding RNA gene	Chr1:90270028-90273085 (+)
CBA/J	MGP_CBAJ_G0014846	unclassified non-coding RNA gene	Chr1:97979362-97982418 (+)
DBA/2J	MGP_DBA2J_G0014939	unclassified non-coding RNA gene	Chr1:87355481-87358536 (+)
FVB/NJ	MGP_FVBNJ_G0014951	unclassified non-coding RNA gene	Chr1:86372376-86375431 (+)
LP/J	MGP_LPJ_G0015022	unclassified non-coding RNA gene	Chr1:92529879-92532934 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014978	unclassified non-coding RNA gene	Chr1:101252485-101255540 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015539	unclassified non-coding RNA gene	Chr1:90756630-90759685 (+)
PWK/PhJ	MGP_PWKPhJ_G0014214	unclassified non-coding RNA gene	Chr1:86748036-86751176 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014003	unclassified non-coding RNA gene	Chr1:89658045-89661105 (+)
WSB/EiJ	MGP_WSBEiJ_G0014525	unclassified non-coding RNA gene	Chr1:90487908-90490963 (+)

Homology

• Gene Tree
  D130058E05Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Gene trapped
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving D130058E05Rik
• Find Mice (IMSR)
  2 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  2

• Ensembl
  ENSMUSG00000092627 (Evidence)
• NCBI Gene
  102637806

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000092627	Ensembl Gene Model | MGI Sequence Detail	3973	C57BL/6J
transcript	ENSMUST00000189763	Ensembl | MGI Sequence Detail	3030	Not Applicable
polypeptide	XP_030100268	RefSeq | MGI Sequence Detail	235	C57BL/6J

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 13

  Phenotypes 6
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for D130058E05Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr8013	Chr1:89857933-89857971 (+)	14 bp