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Trav7d-6 Gene Detail
Summary
  • Symbol
    Trav7d-6
  • Name
    T cell receptor alpha variable 7D-6
  • Synonyms
    C920008G01Rik
  • Feature Type
    gene segment
  • IDs
    MGI:2444626
    NCBI Gene: 320734
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr14:53257916-53258448 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 27.19 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • Strain Annotations
    12
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2444626
 gene segment Chr14:53257873-53258448 (+)
129S1/SvImJ MGP_129S1SvImJ_G0002541
 gene segment Chr14:47001577-47002152 (+)
A/J MGP_AJ_G0002509
 gene segment Chr14:45876861-45877436 (+)
AKR/J MGP_AKRJ_G0002497
 gene segment Chr14:47520834-47521409 (+)
BALB/cJ MGP_BALBcJ_G0002502
 gene segment Chr14:45952138-45952681 (+)
C3H/HeJ no annotation
C57BL/6NJ no annotation
CAROLI/EiJ MGP_CAROLIEiJ_G0002229
 gene segment Chr14:45092602-45093176 (-)
CAST/EiJ MGP_CASTEiJ_G0002473
 gene segment Chr14:44345828-44346403 (+)
CBA/J no annotation
DBA/2J MGP_DBA2J_G0002481
 gene segment Chr14:45624017-45624592 (+)
FVB/NJ no annotation
LP/J no annotation
NOD/ShiLtJ MGP_NODShiLtJ_G0002493
 gene segment Chr14:50963658-50964233 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0002638
 gene segment Chr14:46847553-46848128 (+)
PWK/PhJ MGP_PWKPhJ_G0002420
 gene segment Chr14:42344654-42345229 (+)
SPRET/EiJ MGP_SPRETEiJ_G0002381
 gene segment Chr14:43363609-43364184 (+)
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    TRAV12-3, T cell receptor alpha variable 12-3
  • Vertebrate Orthologs
    6
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRAV12-3, T cell receptor alpha variable 12-3
  • Synonyms
    TCRAV12S3, TCRAV2S2, TRAV123
  • Links
    NCBI Gene ID: 28672
    UniProt: A0A0B4J271

  • Chr Location
    14q11.2; chr14:21965451-21966061 (+)  GRCh38
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    742
  • Tissues
    7
  • cDNA Data
    4
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 320734 NCBI Gene Model | MGI Sequence Detail 533 C57BL/6J ±  kb
transcript AK050592 GenBank | ENA | DDBJ | MGI Sequence Detail 1442 C57BL/6J  
polypeptide A0A0B4J1N1 UniProt | EBI | MGI Sequence Detail 112 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR007110 Immunoglobulin-like domain
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR013106 Immunoglobulin V-set domain
    IPR051006 T cell receptor variable domain
Molecular
Reagents
less
  • All nucleic 4
    cDNA 4

    Microarray probesets 2
Other
Accession IDs
less
MGI:6331097
References
more
  • Summaries
    All 14
    Developmental Gene Expression 1
    Gene Ontology 1
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory