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Prrt3 Gene Detail
Summary
  • Symbol
    Prrt3
  • Name
    proline-rich transmembrane protein 3
  • Synonyms
    B230206N24Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2444810
    NCBI Gene: 210673
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:113470600-113478892 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 52.77 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    250 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2444810
 protein coding gene Chr6:113470599-113479071 (-)
129S1/SvImJ MGP_129S1SvImJ_G0031128
 protein coding gene Chr6:116016445-116024739 (-)
A/J MGP_AJ_G0031097
 protein coding gene Chr6:111570683-111578975 (-)
AKR/J MGP_AKRJ_G0031028
 protein coding gene Chr6:114564247-114572544 (-)
BALB/cJ MGP_BALBcJ_G0031108
 protein coding gene Chr6:111516743-111525097 (-)
C3H/HeJ MGP_C3HHeJ_G0030600
 protein coding gene Chr6:69723889-69732187 (+)
C57BL/6NJ MGP_C57BL6NJ_G0031567
 protein coding gene Chr6:119019337-119027625 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0028731
 protein coding gene Chr6:108598109-108606416 (-)
CAST/EiJ MGP_CASTEiJ_G0030215
 protein coding gene Chr6:115012232-115020518 (-)
CBA/J MGP_CBAJ_G0030794
 protein coding gene Chr6:123713542-123721750 (-)
DBA/2J MGP_DBA2J_G0030947
 protein coding gene Chr6:110650067-110658283 (-)
FVB/NJ MGP_FVBNJ_G0030901
 protein coding gene Chr6:109652134-109660424 (-)
LP/J MGP_LPJ_G0031027
 protein coding gene Chr6:116050420-116058766 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0030935
 protein coding gene Chr6:127981383-127989646 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0031594
 protein coding gene Chr6:114579537-114587816 (-)
PWK/PhJ MGP_PWKPhJ_G0029931
 protein coding gene Chr6:109606717-109615047 (-)
SPRET/EiJ MGP_SPRETEiJ_G0029759
 protein coding gene Chr6:113397405-113405619 (-)
WSB/EiJ MGP_WSBEiJ_G0030299
 protein coding gene Chr6:114954815-114963151 (-)



Homology
more
  • Human Ortholog
    PRRT3, proline rich transmembrane protein 3
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    PRRT3, proline rich transmembrane protein 3
  • Links
    NCBI Gene ID: 285368
    neXtProt AC: NX_Q5FWE3
    UniProt: Q5FWE3

  • Chr Location
    3p25.3; chr3:9939450-9952408 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    11
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000045009 Ensembl Gene Model | MGI Sequence Detail 8293 C57BL/6J ±  kb
transcript ENSMUST00000204268 Ensembl | MGI Sequence Detail 3741 Not Applicable  
polypeptide ENSMUSP00000145443 Ensembl | MGI Sequence Detail 972 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    3 Sequences
  • Protein Ontology
    PR:000029696 proline-rich transmembrane protein 3
    (term hierarchy)
  • InterPro Domains
    IPR043242 Proline-rich transmembrane protein 3
  • GlyGen
    Q6PE13 5 sites, 4 N-linked glycans (4 sites), 1 O-linked glycan (1 site)
Molecular
Reagents
less
  • All nucleic 11
    cDNA 11

    Microarray probesets 5
References
more
  • Summaries
    All 29
    Developmental Gene Expression 1
    Gene Ontology 1
    Phenotypes 9
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:330636 Iwata S, et al., An efficient i-GONAD method for creating and maintaining lethal mutant mice using an inversion balancer identified from the C3H/HeJJcl strain. G3 (Bethesda). 2021;11(8)
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory