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Cped1 Gene Detail
Summary
  • Symbol
    Cped1
  • Name
    cadherin-like and PC-esterase domain containing 1
  • Synonyms
    A430107O13Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2444814
    NCBI Gene: 214642
  • Alliance
    gene page
  • Transcription Start Sites
    13 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:21985915-22256403 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 8.86 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    8536 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2444814
 protein coding gene Chr6:21985875-22256406 (+)
129S1/SvImJ MGP_129S1SvImJ_G0030482
 protein coding gene Chr6:19457746-19757545 (+)
A/J MGP_AJ_G0030455
 protein coding gene Chr6:18671093-18940117 (+)
AKR/J MGP_AKRJ_G0030382
 protein coding gene Chr6:19258627-19542690 (+)
BALB/cJ MGP_BALBcJ_G0030464
 protein coding gene Chr6:18745078-19016381 (+)
C3H/HeJ MGP_C3HHeJ_G0030178
 protein coding gene Chr6:19209808-19491298 (+)
C57BL/6NJ MGP_C57BL6NJ_G0030919
 protein coding gene Chr6:20049643-20354252 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0028130
 protein coding gene Chr6:17286221-17542264 (+)
CAST/EiJ MGP_CASTEiJ_G0029580
 protein coding gene Chr6:19129186-19415891 (+)
CBA/J MGP_CBAJ_G0030156
 protein coding gene Chr6:20715351-21033562 (+)
DBA/2J MGP_DBA2J_G0030300
 protein coding gene Chr6:18570419-18844171 (+)
FVB/NJ MGP_FVBNJ_G0030254
 protein coding gene Chr6:18373413-18638426 (+)
LP/J MGP_LPJ_G0030387
 protein coding gene Chr6:19560302-19865763 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0030290
 protein coding gene Chr6:22555980-22863866 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0030949
 protein coding gene Chr6:19206446-19501025 (+)
PWK/PhJ MGP_PWKPhJ_G0029294
 protein coding gene Chr6:18251572-18522661 (+)
SPRET/EiJ MGP_SPRETEiJ_G0029130
 protein coding gene Chr6:18960633-19239480 (+)
WSB/EiJ MGP_WSBEiJ_G0029656
 protein coding gene Chr6:19092357-19389046 (+)



Homology
more
  • Human Ortholog
    CPED1, cadherin like and PC-esterase domain containing 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CPED1, cadherin like and PC-esterase domain containing 1
  • Synonyms
    C7orf58
  • Links
    NCBI Gene ID: 79974
    neXtProt AC: NX_A4D0V7
    UniProt: A4D0V7

  • Chr Location
    7q31.31; chr7:120988697-121297442 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    926
  • Tissues
    19
  • cDNA Data
    10
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000062980 Ensembl Gene Model | MGI Sequence Detail 270489 C57BL/6J ±  kb
transcript ENSMUST00000115383 Ensembl | MGI Sequence Detail 5690 Not Applicable  
polypeptide ENSMUSP00000111041 Ensembl | MGI Sequence Detail 1026 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    8 Sequences
  • InterPro Domains
    IPR025883 Cadherin-like beta sandwich domain
  • GlyGen
    B2RX70 4 sites, 4 N-linked glycans (4 sites)
Molecular
Reagents
less
  • All nucleic 10
    cDNA 10

    Microarray probesets 6
Other
Accession IDs
less
MGI:2141445
References
more
  • Summaries
    All 27
    Developmental Gene Expression 1
    Gene Ontology 1
    Phenotypes 7
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory