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C230035I16Rik Gene Detail
Summary
  • Symbol
    C230035I16Rik
  • Name
    RIKEN cDNA C230035I16 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:2444850
    NCBI Gene: 320842
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr13:23612146-23615187 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 13, 9.67 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    165 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2444850
 lncRNA gene Chr13:23612129-23615192 (-)
129S1/SvImJ MGP_129S1SvImJ_G0005424
 lincRNA gene Chr13:20833670-20836717 (-)
A/J MGP_AJ_G0005410
 lincRNA gene Chr13:20463857-20466904 (-)
AKR/J MGP_AKRJ_G0005389
 lincRNA gene Chr13:20694497-20697544 (-)
BALB/cJ MGP_BALBcJ_G0005391
 lincRNA gene Chr13:20455076-20458123 (-)
C3H/HeJ MGP_C3HHeJ_G0005339
 lincRNA gene Chr13:20783223-20786270 (-)
C57BL/6NJ MGP_C57BL6NJ_G0005546
 lincRNA gene Chr13:21594064-21597111 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0004927
 lincRNA gene Chr13:19265386-19268537 (-)
CAST/EiJ MGP_CASTEiJ_G0005283
 lincRNA gene Chr13:20469874-20472921 (-)
CBA/J MGP_CBAJ_G0005328
 lincRNA gene Chr13:22426726-22429773 (-)
DBA/2J MGP_DBA2J_G0005344
 lincRNA gene Chr13:20033611-20036658 (-)
FVB/NJ MGP_FVBNJ_G0005370
 lincRNA gene Chr13:19653440-19656487 (-)
LP/J MGP_LPJ_G0005427
 lincRNA gene Chr13:21156267-21159318 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0005353
 lincRNA gene Chr13:22748581-22751632 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0005547
 lincRNA gene Chr13:20557182-20560229 (-)
PWK/PhJ MGP_PWKPhJ_G0005232
 lincRNA gene Chr13:20021077-20024128 (-)
SPRET/EiJ MGP_SPRETEiJ_G0005153
 lincRNA gene Chr13:19352943-19356049 (-)
WSB/EiJ MGP_WSBEiJ_G0005332
 lincRNA gene Chr13:20683512-20686560 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    11 phenotype references
  • All Mutations and Alleles
    31
  • Chemically induced (other)
    1
  • Gene trapped
    29
  • Radiation induced
    1
  • Genomic Mutations
    2 involving C230035I16Rik
  • Find Mice (IMSR)
    8 strains or lines available
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    4
Sequences &
Gene Models
less
  • All Sequences
    47
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 320842 NCBI Gene Model | MGI Sequence Detail 3042 C57BL/6J ±  kb
transcript NR_015492 RefSeq | MGI Sequence Detail 617 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 4
    cDNA 4

    Microarray probesets 1
References
more
  • Summaries
    All 19
    Phenotypes 11
  • Earliest
    J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
  • Latest
    J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory