Gjd2os Gene Detail

Summary

• Symbol
  Gjd2os
• Name
  gap junction protein, delta 2 opposite strand
• Synonyms
  A530058N18Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:2444858
  NCBI Gene: 320846
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:113844046-113862773 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 57.54 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  489 from dbSNP Build 142
• Strain Annotations
  35

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2444858	lncRNA gene	Chr2:113844044-113898805 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015456	unclassified non-coding RNA gene	Chr2:116485746-116504441 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015455	unclassified non-coding RNA gene	Chr2:116485707-116543788 (+)
A/J	MGP_AJ_G0015431	unclassified non-coding RNA gene	Chr2:111755309-111824254 (+)
A/J	MGP_AJ_G0015432	unclassified non-coding RNA gene	Chr2:111755348-111774089 (+)
AKR/J	MGP_AKRJ_G0015396	unclassified non-coding RNA gene	Chr2:114858044-114876749 (+)
AKR/J	MGP_AKRJ_G0015395	unclassified non-coding RNA gene	Chr2:114858005-114923809 (+)
BALB/cJ	MGP_BALBcJ_G0015394	unclassified non-coding RNA gene	Chr2:111982232-112040291 (+)
BALB/cJ	MGP_BALBcJ_G0015395	unclassified non-coding RNA gene	Chr2:111982271-112000971 (+)
C3H/HeJ	MGP_C3HHeJ_G0015217	unclassified non-coding RNA gene	Chr2:115283932-115340805 (+)
C3H/HeJ	MGP_C3HHeJ_G0015218	unclassified non-coding RNA gene	Chr2:115283971-115303602 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015848	unclassified non-coding RNA gene	Chr2:120343541-120399790 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015849	unclassified non-coding RNA gene	Chr2:120343580-120362273 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013587	unclassified non-coding RNA gene	Chr2:106914812-106972864 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013588	unclassified non-coding RNA gene	Chr2:106914851-106933953 (+)
CAST/EiJ	MGP_CASTEiJ_G0014770	unclassified non-coding RNA gene	Chr2:115587339-115606015 (+)
CAST/EiJ	MGP_CASTEiJ_G0014769	unclassified non-coding RNA gene	Chr2:115587300-115645133 (+)
CBA/J	MGP_CBAJ_G0015199	unclassified non-coding RNA gene	Chr2:124553613-124572304 (+)
CBA/J	MGP_CBAJ_G0015198	unclassified non-coding RNA gene	Chr2:124553574-124618570 (+)
DBA/2J	MGP_DBA2J_G0015293	unclassified non-coding RNA gene	Chr2:111203222-111221910 (+)
DBA/2J	MGP_DBA2J_G0015292	unclassified non-coding RNA gene	Chr2:111203183-111258502 (+)
FVB/NJ	MGP_FVBNJ_G0015299	unclassified non-coding RNA gene	Chr2:110060503-110119489 (+)
FVB/NJ	MGP_FVBNJ_G0015300	unclassified non-coding RNA gene	Chr2:110060542-110079243 (+)
LP/J	MGP_LPJ_G0015370	unclassified non-coding RNA gene	Chr2:116791631-116850312 (+)
LP/J	MGP_LPJ_G0015371	unclassified non-coding RNA gene	Chr2:116791670-116810357 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015323	unclassified non-coding RNA gene	Chr2:128936871-128998307 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015324	unclassified non-coding RNA gene	Chr2:128936910-128955642 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015888	unclassified non-coding RNA gene	Chr2:114932147-114992466 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015889	unclassified non-coding RNA gene	Chr2:114932186-114950887 (+)
PWK/PhJ	MGP_PWKPhJ_G0014558	unclassified non-coding RNA gene	Chr2:110719789-110738417 (+)
PWK/PhJ	MGP_PWKPhJ_G0014557	unclassified non-coding RNA gene	Chr2:110719750-110775782 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014345	unclassified non-coding RNA gene	Chr2:114087490-114149620 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014346	unclassified non-coding RNA gene	Chr2:114087529-114106228 (+)
WSB/EiJ	MGP_WSBEiJ_G0014876	unclassified non-coding RNA gene	Chr2:115756173-115813130 (+)
WSB/EiJ	MGP_WSBEiJ_G0014877	unclassified non-coding RNA gene	Chr2:115756212-115774943 (+)

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gjd2os
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• cDNA Data
  7

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  59
• RefSeq
  1

• Ensembl
  ENSMUSG00000087694 (Evidence), ENSMUSG00000092201 (Evidence)
• NCBI Gene
  320846

Representative Sequences			Length	Strain/Species
genomic	320846	NCBI Gene Model | MGI Sequence Detail	18728	C57BL/6J
transcript	NR_028423	RefSeq | MGI Sequence Detail	1572	C57BL/6

Molecular
Reagents

• All nucleic 9

  cDNA 9

  
  

  Microarray probesets 3

Other
Accession IDs

MGI:7567982

References

• Summaries
  All 13

  Phenotypes 3
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for Gjd2os:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr599	Chr2:113844173-113844208 (+)	145 bp