B230206H07Rik Gene Detail

Summary

• Symbol
  B230206H07Rik
• Name
  RIKEN cDNA B230206H07 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2444929
  NCBI Gene: 320871
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr7:140939091-140945023 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 86.69 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  259 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2444929	lncRNA gene	Chr7:140939054-140945104 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015699	unclassified non-coding RNA gene	Chr7:146544241-146551306 (-)
A/J	MGP_AJ_G0015677	unclassified non-coding RNA gene	Chr7:142352023-142357997 (-)
AKR/J	MGP_AKRJ_G0015640	unclassified non-coding RNA gene	Chr7:146283357-146289330 (-)
BALB/cJ	MGP_BALBcJ_G0015638	unclassified non-coding RNA gene	Chr7:142097204-142103159 (-)
C3H/HeJ	MGP_C3HHeJ_G0015460	unclassified non-coding RNA gene	Chr7:146042930-146048897 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0016093	unclassified non-coding RNA gene	Chr7:151897274-151903265 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013822	unclassified non-coding RNA gene	Chr7:143564823-143570559 (-)
CAST/EiJ	MGP_CASTEiJ_G0015015	unclassified non-coding RNA gene	Chr7:138342209-138348146 (-)
CBA/J	MGP_CBAJ_G0015441	unclassified non-coding RNA gene	Chr7:157046221-157053863 (-)
DBA/2J	MGP_DBA2J_G0015537	unclassified non-coding RNA gene	Chr7:140299749-140305675 (-)
FVB/NJ	MGP_FVBNJ_G0015543	unclassified non-coding RNA gene	Chr7:140214082-140220275 (-)
LP/J	MGP_LPJ_G0015617	unclassified non-coding RNA gene	Chr7:148040837-148046790 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015565	unclassified non-coding RNA gene	Chr7:157688380-157695649 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016135	unclassified non-coding RNA gene	Chr7:145255599-145261568 (-)
PWK/PhJ	MGP_PWKPhJ_G0014797	unclassified non-coding RNA gene	Chr7:133580635-133586717 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014586	unclassified non-coding RNA gene	Chr7:132078149-132086124 (-)
WSB/EiJ	MGP_WSBEiJ_G0015120	unclassified non-coding RNA gene	Chr7:146205073-146211075 (-)

Homology

• Gene Tree
  B230206H07Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving B230206H07Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000086844 (Evidence)
• NCBI Gene
  320871

Representative Sequences			Length	Strain/Species
genomic	320871	NCBI Gene Model | MGI Sequence Detail	5933	C57BL/6J
transcript	NR_033532	RefSeq | MGI Sequence Detail	2935	C57BL/6
polypeptide	Q8CAG9	UniProt | EBI | MGI Sequence Detail	166	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 4

  Genomic 2

  cDNA 2

References

• Summaries
  All 12

  Phenotypes 3
• Earliest
  J:65007 Cattanach BM, et al., Two imprinted gene mutations: three phenotypes. Hum Mol Genet. 2000 Sep 22;9(15):2263-73
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for B230206H07Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr75639	Chr7:140945087-140945103 (-)	-72 bp
Tssr75638	Chr7:140944993-140945024 (-)	14 bp