8030431J09Rik Gene Detail

Summary

• Symbol
  8030431J09Rik
• Name
  RIKEN cDNA 8030431J09 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2444987
  NCBI Gene: 105244251
• Alliance
  gene page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr2:103398987-103457495 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1391 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2444987	lncRNA gene	Chr2:103398987-103457495 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 8030431J09Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• cDNA Data
  2

Sequences &
Gene Models

• All Sequences
  5
• RefSeq
  1

• NCBI Gene
  105244251

Representative Sequences			Length	Strain/Species
genomic	105244251	NCBI Gene Model | MGI Sequence Detail	58509	C57BL/6J
transcript	AK088394	GenBank | ENA | DDBJ | MGI Sequence Detail	3497	NOD

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 8030431J09Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr19164	Chr2:103402466-103402470 (+)	3,481 bp
Tssr19165	Chr2:103405714-103405718 (+)	6,729 bp
Tssr19166	Chr2:103413938-103413947 (+)	14,956 bp
Tssr19167	Chr2:103436760-103436770 (+)	37,778 bp
Tssr19168	Chr2:103436773-103436786 (+)	37,793 bp
Tssr19169	Chr2:103442707-103442711 (+)	43,722 bp