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Ccdc85a Gene Detail
Summary
  • Symbol
    Ccdc85a
  • Name
    coiled-coil domain containing 85A
  • Synonyms
    E030025D05Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2445069
    NCBI Gene: 216613
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:28335685-28534324 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 11, 16.22 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    5364 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2445069
 protein coding gene Chr11:28335685-28537234 (-)
129S1/SvImJ MGP_129S1SvImJ_G0018101
 protein coding gene Chr11:26349969-26562163 (-)
A/J MGP_AJ_G0018073
 protein coding gene Chr11:25389387-25599884 (-)
AKR/J MGP_AKRJ_G0018038
 protein coding gene Chr11:26195518-26419659 (-)
BALB/cJ MGP_BALBcJ_G0018041
 protein coding gene Chr11:25551117-25752119 (-)
C3H/HeJ MGP_C3HHeJ_G0017855
 protein coding gene Chr11:26143665-26350090 (-)
C57BL/6NJ MGP_C57BL6NJ_G0018494
 protein coding gene Chr11:27333744-27546442 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0016151
 protein coding gene Chr11:24064502-24267305 (-)
CAST/EiJ MGP_CASTEiJ_G0017417
 protein coding gene Chr11:26165488-26375348 (-)
CBA/J MGP_CBAJ_G0017829
 protein coding gene Chr11:28553959-28789146 (-)
DBA/2J MGP_DBA2J_G0017939
 protein coding gene Chr11:25243628-25446395 (-)
FVB/NJ MGP_FVBNJ_G0017931
 protein coding gene Chr11:25056496-25250528 (-)
LP/J MGP_LPJ_G0018011
 protein coding gene Chr11:26607894-26819454 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0017957
 protein coding gene Chr11:29558641-29819312 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0018534
 protein coding gene Chr11:26339504-26553215 (-)
PWK/PhJ MGP_PWKPhJ_G0017198
 protein coding gene Chr11:25333875-25548712 (-)
SPRET/EiJ MGP_SPRETEiJ_G0016994
 protein coding gene Chr11:26019789-26229916 (-)
WSB/EiJ MGP_WSBEiJ_G0017470
 protein coding gene Chr11:26023111-26232541 (-)



Homology
more
  • Human Ortholog
    CCDC85A, coiled-coil domain containing 85A
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CCDC85A, coiled-coil domain containing 85A
  • Links
    NCBI Gene ID: 114800
    neXtProt AC: NX_Q96PX6
    UniProt: Q96PX6

  • Chr Location
    2p16.1; chr2:56183852-56386174 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    8 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    2
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    748
  • Tissues
    10
  • cDNA Data
    13
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000032878 Ensembl Gene Model | MGI Sequence Detail 198640 C57BL/6J ±  kb
transcript ENSMUST00000146385 Ensembl | MGI Sequence Detail 3798 Not Applicable  
polypeptide ENSMUSP00000124972 Ensembl | MGI Sequence Detail 545 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 15
    Genomic 2
    cDNA 13

    Microarray probesets 4
References
more
  • Summaries
    All 27
    Developmental Gene Expression 1
    Gene Ontology 2
    Phenotypes 8
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
  • Latest
    J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory