1700006J14Rik Gene Detail

Summary

• Symbol
  1700006J14Rik
• Name
  RIKEN cDNA 1700006J14 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2447818
  NCBI Gene: 321010
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr10:120200062-120220241 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 67.94 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  661 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2447818	lncRNA gene	Chr10:120200062-120220241 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015141	unclassified non-coding RNA gene	Chr10:123525062-123545094 (+)
A/J	MGP_AJ_G0015115	unclassified non-coding RNA gene	Chr10:118636963-118657014 (+)
AKR/J	MGP_AKRJ_G0015078	unclassified non-coding RNA gene	Chr10:122175125-122195164 (+)
BALB/cJ	MGP_BALBcJ_G0015078	unclassified non-coding RNA gene	Chr10:119018676-119044611 (+)
C3H/HeJ	MGP_C3HHeJ_G0014901	unclassified non-coding RNA gene	Chr10:122372455-122394326 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015534	unclassified non-coding RNA gene	Chr10:127708486-127729627 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013280	unclassified non-coding RNA gene	Chr10:112987684-113007220 (+)
CAST/EiJ	MGP_CASTEiJ_G0014455	unclassified non-coding RNA gene	Chr10:122697296-122718110 (+)
CBA/J	MGP_CBAJ_G0014880	unclassified non-coding RNA gene	Chr10:132919106-132938822 (+)
DBA/2J	MGP_DBA2J_G0014973	unclassified non-coding RNA gene	Chr10:117769778-117789990 (+)
FVB/NJ	MGP_FVBNJ_G0014984	unclassified non-coding RNA gene	Chr10:116757238-116777183 (+)
LP/J	MGP_LPJ_G0015055	unclassified non-coding RNA gene	Chr10:124074255-124095498 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015011	unclassified non-coding RNA gene	Chr10:135513468-135537120 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015573	unclassified non-coding RNA gene	Chr10:122176976-122197606 (+)
PWK/PhJ	MGP_PWKPhJ_G0014247	unclassified non-coding RNA gene	Chr10:117870864-117891566 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014035	unclassified non-coding RNA gene	Chr10:121071236-121092517 (+)
WSB/EiJ	MGP_WSBEiJ_G0014558	unclassified non-coding RNA gene	Chr10:122420147-122440646 (+)

Homology

• Gene Tree
  1700006J14Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 1700006J14Rik
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  18
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  3
• UniProt
  1

• Ensembl
  ENSMUSG00000034764 (Evidence)
• NCBI Gene
  321010

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000034764	Ensembl Gene Model | MGI Sequence Detail	20180	C57BL/6J
transcript	ENSMUST00000160091	Ensembl | MGI Sequence Detail	2629	Not Applicable
polypeptide	Q9CPR3	UniProt | EBI | MGI Sequence Detail	103	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 18

  cDNA 18

  
  

  Microarray probesets 3

References

• Summaries
  All 19

  Developmental Gene Expression 1

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:356411 Bao J, et al., Expression profiling reveals developmentally regulated lncRNA repertoire in the mouse male germline. Biol Reprod. 2013 Nov;89(5):107

TSS for 1700006J14Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr95996	Chr10:120200039-120200081 (+)	-2 bp
Tssr95997	Chr10:120216621-120216623 (+)	16,560 bp