4930473A02Rik Gene Detail

Summary

• Symbol
  4930473A02Rik
• Name
  RIKEN cDNA 4930473A02 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2447823
  NCBI Gene: 321014
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:130385711-130405669 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 63.24 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  612 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2447823	lncRNA gene	Chr2:130385711-130405669 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015471	unclassified non-coding RNA gene	Chr2:134006792-134027799 (-)
A/J	MGP_AJ_G0015447	unclassified non-coding RNA gene	Chr2:128583305-128603240 (-)
AKR/J	MGP_AKRJ_G0015411	unclassified non-coding RNA gene	Chr2:132291136-132313096 (-)
BALB/cJ	MGP_BALBcJ_G0015410	unclassified non-coding RNA gene	Chr2:128937907-128958417 (-)
C3H/HeJ	MGP_C3HHeJ_G0015233	unclassified non-coding RNA gene	Chr2:132722602-132743338 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015864	unclassified non-coding RNA gene	Chr2:138146801-138168638 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0014785	unclassified non-coding RNA gene	Chr2:132978735-133000020 (-)
CBA/J	MGP_CBAJ_G0015214	unclassified non-coding RNA gene	Chr2:143253125-143275911 (-)
DBA/2J	MGP_DBA2J_G0015308	unclassified non-coding RNA gene	Chr2:127970404-127990252 (-)
FVB/NJ	MGP_FVBNJ_G0015315	unclassified non-coding RNA gene	Chr2:126597198-126617103 (-)
LP/J	MGP_LPJ_G0015386	unclassified non-coding RNA gene	Chr2:134255109-134274937 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015339	unclassified non-coding RNA gene	Chr2:147105839-147127553 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015904	unclassified non-coding RNA gene	Chr2:132246334-132266193 (-)
PWK/PhJ	MGP_PWKPhJ_G0014573	unclassified non-coding RNA gene	Chr2:127528063-127548671 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014361	unclassified non-coding RNA gene	Chr2:131370392-131390149 (-)
WSB/EiJ	MGP_WSBEiJ_G0014892	unclassified non-coding RNA gene	Chr2:133169507-133190074 (-)

Homology

• Gene Tree
  4930473A02Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Gene trapped
  2
• Radiation induced
  1
• Genomic Mutations
  2 involving 4930473A02Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000060029 (Evidence)
• NCBI Gene
  321014

Representative Sequences			Length	Strain/Species
genomic	321014	NCBI Gene Model | MGI Sequence Detail	19959	C57BL/6J
transcript	NR_040348	RefSeq | MGI Sequence Detail	1409	C57BL/6
polypeptide	Q9CUL2	UniProt | EBI | MGI Sequence Detail	104	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 2

References

• Summaries
  All 15

  Phenotypes 5
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for 4930473A02Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr26300	Chr2:130405637-130405646 (-)	27 bp