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Sec22a Gene Detail
Summary
  • Symbol
    Sec22a
  • Name
    SEC22 homolog A, vesicle trafficking protein
  • Synonyms
    1810005C06Rik, Sec22l2
  • Feature Type
    protein coding gene
  • IDs
    MGI:2447876
    NCBI Gene: 317717
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr16:35131505-35184222 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 16, 25.21 cM, cytoband B3
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1414 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2447876
 protein coding gene Chr16:35131501-35184288 (-)
129S1/SvImJ MGP_129S1SvImJ_G0022767
 protein coding gene Chr16:33616374-33669225 (-)
A/J MGP_AJ_G0022732
 protein coding gene Chr16:31989135-32041114 (-)
AKR/J MGP_AKRJ_G0022705
 protein coding gene Chr16:33107226-33160201 (-)
BALB/cJ MGP_BALBcJ_G0022734
 protein coding gene Chr16:32120256-32174071 (-)
C3H/HeJ MGP_C3HHeJ_G0022499
 protein coding gene Chr16:33255582-33308740 (-)
C57BL/6NJ MGP_C57BL6NJ_G0023183
 protein coding gene Chr16:34342733-34399598 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0020701
 protein coding gene Chr16:32355986-32407919 (-)
CAST/EiJ MGP_CASTEiJ_G0022027
 protein coding gene Chr16:33463911-33519983 (-)
CBA/J MGP_CBAJ_G0022469
 protein coding gene Chr16:35749460-35801547 (-)
DBA/2J MGP_DBA2J_G0022602
 protein coding gene Chr16:31819908-31873035 (-)
FVB/NJ MGP_FVBNJ_G0022577
 protein coding gene Chr16:31819439-31873921 (-)
LP/J MGP_LPJ_G0022669
 protein coding gene Chr16:33342341-33396682 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0022596
 protein coding gene Chr16:35028218-35083767 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0023195
 protein coding gene Chr16:33158068-33214127 (-)
PWK/PhJ MGP_PWKPhJ_G0021768
 protein coding gene Chr16:32216323-32270291 (-)
SPRET/EiJ MGP_SPRETEiJ_G0021599
 protein coding gene Chr16:32962292-33019155 (-)
WSB/EiJ MGP_WSBEiJ_G0022071
 protein coding gene Chr16:33096299-33151799 (-)



Homology
more
  • Human Ortholog
    SEC22A, SEC22 homolog A, vesicle trafficking protein
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SEC22A, SEC22 homolog A, vesicle trafficking protein
  • Synonyms
    SEC22L2
  • Links
    NCBI Gene ID: 26984
    neXtProt AC: NX_Q96IW7
    UniProt: Q96IW7

  • Chr Location
    3q21.1; chr3:123201927-123274136 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    5
  • GO References
    5
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    56
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 317717 NCBI Gene Model | MGI Sequence Detail 52718 C57BL/6J ±  kb
transcript NM_001418697 RefSeq | MGI Sequence Detail 3927 C57BL/6  
polypeptide Q8BH47 UniProt | EBI | MGI Sequence Detail 307 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 56
    cDNA 56

    Microarray probesets 4
Other
Accession IDs
less
MGI:1916271
References
more
  • Summaries
    All 31
    Gene Ontology 5
    Phenotypes 5
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory