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H3c10 Gene Detail
Summary
  • Symbol
    H3c10
  • Name
    H3 clustered histone 10
  • Synonyms
    H3-291, Hist1h3h
  • Feature Type
    protein coding gene
  • IDs
    MGI:2448349
    NCBI Gene: 319152
  • Member of
    Hist1 cluster
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr13:21901829-21902239 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 13, 7.94 cM, cytoband A2-A3
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    171 from dbSNP Build 142
  • Strain Annotations
    8
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2448349
 protein coding gene Chr13:21901798-21902285 (+)
129S1/SvImJ no annotation
A/J MGP_AJ_G0020246
 protein coding gene Chr13:18574504-18575159 (+)
AKR/J no annotation
BALB/cJ no annotation
C3H/HeJ MGP_C3HHeJ_G0020040
 protein coding gene Chr13:18981048-18983140 (+)
C57BL/6NJ no annotation
CAROLI/EiJ MGP_CAROLIEiJ_G0018286
 protein coding gene Chr13:16895739-16896377 (+)
CAST/EiJ MGP_CASTEiJ_G0019572
 protein coding gene Chr13:18791546-18791878 (+)
CBA/J no annotation
DBA/2J no annotation
FVB/NJ MGP_FVBNJ_G0020106
 protein coding gene Chr13:17869371-17869713 (+)
LP/J MGP_LPJ_G0020194
 protein coding gene Chr13:19231210-19231682 (+)
NOD/ShiLtJ no annotation
NZO/HlLtJ no annotation
PWK/PhJ no annotation
SPRET/EiJ MGP_SPRETEiJ_G0019141
 protein coding gene Chr13:17700674-17701090 (+)
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    H3C1, H3 clustered histone 1
  • Vertebrate Orthologs
    13
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    H3C1, H3 clustered histone 1
  • Synonyms
    H3/A, H3C10, H3C11, H3C12, H3C2, H3C3, H3C4, H3C6, H3C7, H3C8, H3FA, HIST1H3A
  • Links
    NCBI Gene ID: 8350
    neXtProt AC: NX_P68431
    UniProt: P68431

  • Chr Location
    6p22.2; chr6:26020451-26020958 (+)  GRCh38
  • Human Ortholog
    H3C10, H3 clustered histone 10
  • Synonyms
    H3C1, H3C11, H3C12, H3C2, H3C3, H3C4, H3C6, H3C7, H3C8, H3F1K, H3FK, H3/k, HIST1H3H
  • Links
    NCBI Gene ID: 8357
    neXtProt AC: NX_P68431
    UniProt: P68431

  • Chr Location
    6p22.1; chr6:27810051-27811300 (+)  GRCh38
  • Human Ortholog
    H3C11, H3 clustered histone 11
  • Synonyms
    H3C1, H3C10, H3C12, H3C2, H3C3, H3C4, H3C6, H3C7, H3C8, H3.f, H3/f, H3FF, HIST1H3I
  • Links
    NCBI Gene ID: 8354
    neXtProt AC: NX_P68431
    UniProt: P68431

  • Chr Location
    6p22.1; chr6:27871845-27872346 (-)  GRCh38
  • Human Ortholog
    H3C2, H3 clustered histone 2
  • Synonyms
    H3C1, H3C10, H3C11, H3C12, H3C3, H3C4, H3C6, H3C7, H3C8, H3FL, H3/l, HIST1H3B
  • Links
    NCBI Gene ID: 8358
    neXtProt AC: NX_P68431
    UniProt: P68431

  • Chr Location
    6p22.2; chr6:26031589-26032099 (-)  GRCh38
  • Human Ortholog
    H3C3, H3 clustered histone 3
  • Synonyms
    H3.1, H3/c, H3C1, H3C10, H3C11, H3C12, H3C2, H3C4, H3C6, H3C7, H3C8, H3FC, HIST1H3C
  • Links
    NCBI Gene ID: 8352
    neXtProt AC: NX_P68431
    UniProt: P68431

  • Chr Location
    6p22.2; chr6:26045384-26045869 (+)  GRCh38
  • Human Ortholog
    H3C6, H3 clustered histone 6
  • Synonyms
    H3.1, H3C1, H3C10, H3C11, H3C12, H3C2, H3C3, H3C4, H3C7, H3C8, H3/d, H3FD, HIST1H3E
  • Links
    NCBI Gene ID: 8353
    neXtProt AC: NX_P68431
    UniProt: P68431

  • Chr Location
    6p22.2; chr6:26224178-26227473 (+)  GRCh38
  • Human Ortholog
    H3C8, H3 clustered histone 8
  • Synonyms
    H3C1, H3C10, H3C11, H3C12, H3C2, H3C3, H3C4, H3C6, H3C7, H3FH, H3/h, HIST1H3G
  • Links
    NCBI Gene ID: 8355
    neXtProt AC: NX_P68431
    UniProt: P68431

  • Chr Location
    6p22.2; chr6:26270918-26271413 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    8 phenotype references
  • All Mutations and Alleles
    2
  • Chemically induced (other)
    1
  • Radiation induced
    1
  • Genomic Mutations
    2 involving H3c10
  • Find Mice (IMSR)
    2 strains or lines available
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    4
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    2
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000101355 Ensembl Gene Model | MGI Sequence Detail 411 C57BL/6J ±  kb
transcript ENSMUST00000188775 Ensembl | MGI Sequence Detail 411 Not Applicable  
polypeptide ENSMUSP00000140394 Ensembl | MGI Sequence Detail 136 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 3
    Genomic 1
    cDNA 2
Other
Accession IDs
less
MGI:6324998
References
more
  • Summaries
    All 23
    Gene Ontology 1
    Phenotypes 8
  • Earliest
    J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
  • Latest
    J:320533 Kawamura M, et al., The expression and nuclear deposition of histone H3.1 in murine oocytes and preimplantation embryos. J Reprod Dev. 2012;58(5):557-62
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory