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R3hdm1 Gene Detail
Summary
  • Symbol
    R3hdm1
  • Name
    R3H domain containing 1
  • Feature Type
    protein coding gene
  • IDs
    MGI:2448514
    NCBI Gene: 226412
  • Alliance
    gene page
  • Transcription Start Sites
    15 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:128031038-128165473 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 1, 55.80 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    2494 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2448514
 protein coding gene Chr1:128031016-128165475 (+)
129S1/SvImJ MGP_129S1SvImJ_G0016426
 protein coding gene Chr1:131325230-131464815 (+)
A/J MGP_AJ_G0016409
 protein coding gene Chr1:126432942-126570070 (+)
AKR/J MGP_AKRJ_G0016374
 protein coding gene Chr1:130171510-130315675 (+)
BALB/cJ MGP_BALBcJ_G0016369
 protein coding gene Chr1:126810215-126943920 (+)
C3H/HeJ MGP_C3HHeJ_G0016195
 protein coding gene Chr1:130342046-130478391 (+)
C57BL/6NJ MGP_C57BL6NJ_G0016830
 protein coding gene Chr1:136272256-136414212 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0014543
 protein coding gene Chr1:119794187-119928622 (+)
CAST/EiJ MGP_CASTEiJ_G0015776
 protein coding gene Chr1:129311090-129449724 (+)
CBA/J MGP_CBAJ_G0016168
 protein coding gene Chr1:140863880-141006944 (+)
DBA/2J MGP_DBA2J_G0016274
 protein coding gene Chr1:125472742-125607590 (+)
FVB/NJ MGP_FVBNJ_G0016273
 protein coding gene Chr1:124185721-124321458 (+)
LP/J MGP_LPJ_G0016345
 protein coding gene Chr1:132679546-132818553 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0016298
 protein coding gene Chr1:146702695-146860854 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0016866
 protein coding gene Chr1:129950013-130088739 (+)
PWK/PhJ MGP_PWKPhJ_G0015562
 protein coding gene Chr1:124443356-124577047 (+)
SPRET/EiJ MGP_SPRETEiJ_G0015350
 protein coding gene Chr1:128910464-129047225 (+)
WSB/EiJ MGP_WSBEiJ_G0015838
 protein coding gene Chr1:129897143-130035816 (+)



Homology
more
  • Human Ortholog
    R3HDM1, R3H domain containing 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    R3HDM1, R3H domain containing 1
  • Synonyms
    R3HDM
  • Links
    NCBI Gene ID: 23518
    neXtProt AC: NX_Q15032
    UniProt: Q15032

  • Chr Location
    2q21.3; chr2:135531455-135725270 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotypes from 1 allele in 1 genetic background
    15 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    793
  • Tissues
    49
  • cDNA Data
    130
  • Literature Summary
    5
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000056211 Ensembl Gene Model | MGI Sequence Detail 134436 C57BL/6J ±  kb
    transcript ENSMUST00000036288 Ensembl | MGI Sequence Detail 4795 Not Applicable  
    polypeptide ENSMUSP00000043103 Ensembl | MGI Sequence Detail 1135 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 134
      cDNA 131
      Primer pair 3

      Microarray probesets 5
    References
    more
    • Summaries
      All 40
      Developmental Gene Expression 5
      Phenotypes 15
    • Earliest
      J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    12/10/2024
    MGI 6.24     		The Jackson Laboratory