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Zgpat Gene Detail
Summary
  • Symbol
    Zgpat
  • Name
    zinc finger, CCCH-type with G patch domain
  • Synonyms
    MGC:25688, MGC:38468
  • Feature Type
    protein coding gene
  • IDs
    MGI:2449939
    NCBI Gene: 229007
  • Alliance
    gene page
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:181006724-181022586 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 103.63 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    304 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2449939
 protein coding gene Chr2:181006721-181025421 (+)
129S1/SvImJ MGP_129S1SvImJ_G0027021
 protein coding gene Chr2:187951825-187972634 (+)
A/J MGP_AJ_G0026987
 protein coding gene Chr2:180217037-180235719 (+)
AKR/J MGP_AKRJ_G0026958
 protein coding gene Chr2:185619414-185638214 (+)
BALB/cJ MGP_BALBcJ_G0026996
 protein coding gene Chr2:180689355-180708553 (+)
C3H/HeJ MGP_C3HHeJ_G0026737
 protein coding gene Chr2:185971981-185990671 (+)
C57BL/6NJ MGP_C57BL6NJ_G0027442
 protein coding gene Chr2:193383060-193401702 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0024806
 protein coding gene Chr2:170899335-170917495 (+)
CAST/EiJ MGP_CASTEiJ_G0026196
 protein coding gene Chr2:184231786-184255918 (+)
CBA/J MGP_CBAJ_G0026714
 protein coding gene Chr2:200390910-200410793 (+)
DBA/2J MGP_DBA2J_G0026852
 protein coding gene Chr2:179314713-179333723 (+)
FVB/NJ MGP_FVBNJ_G0026818
 protein coding gene Chr2:177932497-177951177 (+)
LP/J MGP_LPJ_G0026953
 protein coding gene Chr2:187977947-187996675 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0026837
 protein coding gene Chr2:202950803-202970679 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0027501
 protein coding gene Chr2:185587271-185605948 (+)
PWK/PhJ MGP_PWKPhJ_G0025932
 protein coding gene Chr2:176836532-176857574 (+)
SPRET/EiJ MGP_SPRETEiJ_G0025732
 protein coding gene Chr2:182090450-182109467 (+)
WSB/EiJ MGP_WSBEiJ_G0026268
 protein coding gene Chr2:186574309-186593050 (+)



Homology
more
  • Human Ortholog
    ZGPAT, zinc finger CCCH-type and G-patch domain containing
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    ZGPAT, zinc finger CCCH-type and G-patch domain containing
  • Synonyms
    GPATC6, GPATCH6, KIAA1847, ZC3H9, ZC3HDC9, ZIP
  • Links
    NCBI Gene ID: 84619
    neXtProt AC: NX_Q8N5A5
    UniProt: Q8N5A5

  • Chr Location
    20q13.33; chr20:63707442-63736142 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotypes from 1 allele in 1 genetic background
    7 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    27
  • GO References
    5
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    846
  • Tissues
    28
  • cDNA Data
    11
  • Literature Summary
    2
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 229007 NCBI Gene Model | MGI Sequence Detail 15863 C57BL/6J ±  kb
transcript NM_144894 RefSeq | MGI Sequence Detail 2289 C57BL/6  
polypeptide Q8VDM1 UniProt | EBI | MGI Sequence Detail 511 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 12
    cDNA 11
    Primer pair 1

    Microarray probesets 3
References
more
  • Summaries
    All 32
    Developmental Gene Expression 2
    Gene Ontology 5
    Phenotypes 7
  • Earliest
    J:91257 Gray PA, et al., Mouse Brain Organization Revealed Through Direct Genome-Scale TF Expression Analysis. Science. 2004 Dec 24;306(5705):2255-2257
  • Latest
    J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory