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Atp10d Pseudogene Detail
Summary
  • Symbol
    Atp10d
  • Name
    ATPase, class V, type 10D
  • Synonyms
    9830145H18Rik, D5Buc24e, IMAGE:1069176
Location &
Maps
more
  • Sequence Map
    Chr5:72360672-72456114 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 38.44 cM
  • Mapping Data
    4 experiments
Strain
Comparison
more
  • SNPs within 2kb
    2958 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2450125
 polymorphic pseudogene Chr5:72360672-72456118 (+)
129S1/SvImJ MGP_129S1SvImJ_G0009944
 polymorphic pseudogene Chr5:72109492-72211042 (+)
A/J MGP_AJ_G0009928
 polymorphic pseudogene Chr5:69416041-69513972 (+)
AKR/J MGP_AKRJ_G0009911
 polymorphic pseudogene Chr5:71633604-71742165 (+)
BALB/cJ MGP_BALBcJ_G0009912
 polymorphic pseudogene Chr5:70087224-70181264 (+)
C3H/HeJ MGP_C3HHeJ_G0009844
 polymorphic pseudogene Chr5:72005183-72103921 (+)
C57BL/6NJ MGP_C57BL6NJ_G0010161
 polymorphic pseudogene Chr5:75100630-75201676 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0008954
 polymorphic pseudogene Chr5:65146905-65242431 (+)
CAST/EiJ MGP_CASTEiJ_G0009662
 polymorphic pseudogene Chr5:71124507-71226969 (+)
CBA/J MGP_CBAJ_G0009818
 polymorphic pseudogene Chr5:77502145-77601780 (+)
DBA/2J MGP_DBA2J_G0009846
 polymorphic pseudogene Chr5:69476910-69572363 (+)
FVB/NJ MGP_FVBNJ_G0009864
 polymorphic pseudogene Chr5:68654530-68750352 (+)
LP/J MGP_LPJ_G0009941
 polymorphic pseudogene Chr5:72600593-72698202 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0009830
 polymorphic pseudogene Chr5:80892278-80993683 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0010132
 polymorphic pseudogene Chr5:71224850-71325405 (+)
PWK/PhJ MGP_PWKPhJ_G0009583
 polymorphic pseudogene Chr5:68438888-68539841 (+)
SPRET/EiJ MGP_SPRETEiJ_G0009414
 polymorphic pseudogene Chr5:70592491-70711690 (+)
WSB/EiJ MGP_WSBEiJ_G0009766
 polymorphic pseudogene Chr5:71470506-71571961 (+)



Homology
more
  • Human Ortholog
    ATP10D, ATPase phospholipid transporting 10D (putative)
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    ATP10D, ATPase phospholipid transporting 10D (putative)
  • Synonyms
    ATPVD
  • Links
    NCBI Gene ID: 57205
    neXtProt AC: NX_Q9P241
    UniProt: Q9P241

  • Chr Location
    4p12; chr4:47485275-47593486 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    24 phenotype references
  • All Mutations and Alleles
    13
  • Chemically induced (other)
    2
  • Endonuclease-mediated
    2
  • Gene trapped
    5
  • Radiation induced
    1
  • Spontaneous
    3
  • Genomic Mutations
    4 involving Atp10d
  • Incidental Mutations
    CvDC
  • Find Mice (IMSR)
    24 strains or lines available
The C57BL/6J strain carries a spontaneous knockout mutation. Viability and fertility are unaffected.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    19
  • GO References
    7
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    708
  • Tissues
    1
  • cDNA Data
    10
  • Literature Summary
    1
Sequences &
Gene Models
less
  • All Sequences
    48
  • RefSeq
    3
  • UniProt
    4
Representative SequencesLengthStrain/SpeciesFlank
genomic 231287 NCBI Gene Model | MGI Sequence Detail 95443 C57BL/6J ±  kb
transcript NR_003966 RefSeq | MGI Sequence Detail 6048 C57BL/6  
polypeptide Q8K2X1 UniProt | EBI | MGI Sequence Detail 1416 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 17
    Genomic 4
    cDNA 11
    Primer pair 2

    Microarray probesets 3
Other
Accession IDs
less
MGI:1343479, MGI:2444239
References
more
  • Summaries
    All 52
    Developmental Gene Expression 1
    Gene Ontology 7
    Phenotypes 24
  • Earliest
    J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
  • Latest
    J:345883 Norris AC, et al., ATP10A deficiency results in male-specific infertility in mice. Front Cell Dev Biol. 2024;12:1310593
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory