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Smim13 Gene Detail
Summary
  • Symbol
    Smim13
  • Name
    small integral membrane protein 13
  • Synonyms
    2900036K02Rik, BC024659
  • Feature Type
    protein coding gene
  • IDs
    MGI:2652854
    NCBI Gene: 108934
  • Alliance
    gene page
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr13:41403320-41430053 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 13, 20.41 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    698 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2652854
 protein coding gene Chr13:41403320-41430053 (+)
129S1/SvImJ MGP_129S1SvImJ_G0020487
 protein coding gene Chr13:39736051-39764192 (+)
A/J MGP_AJ_G0020441
 protein coding gene Chr13:38411679-38435942 (+)
AKR/J MGP_AKRJ_G0020419
 protein coding gene Chr13:39455298-39480309 (+)
BALB/cJ MGP_BALBcJ_G0020437
 protein coding gene Chr13:38595010-38618650 (+)
C3H/HeJ MGP_C3HHeJ_G0020236
 protein coding gene Chr13:39333259-39359952 (+)
C57BL/6NJ MGP_C57BL6NJ_G0020870
 protein coding gene Chr13:40993264-41020049 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0018457
 protein coding gene Chr13:36543373-36566771 (+)
CAST/EiJ MGP_CASTEiJ_G0019751
 protein coding gene Chr13:39115132-39138749 (+)
CBA/J MGP_CBAJ_G0020197
 protein coding gene Chr13:42753738-42777560 (+)
DBA/2J MGP_DBA2J_G0020319
 protein coding gene Chr13:37982156-38006429 (+)
FVB/NJ MGP_FVBNJ_G0020298
 protein coding gene Chr13:37476116-37501716 (+)
LP/J MGP_LPJ_G0020394
 protein coding gene Chr13:39978257-40003512 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0020327
 protein coding gene Chr13:42710689-42737076 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0020913
 protein coding gene Chr13:39101681-39127273 (+)
PWK/PhJ MGP_PWKPhJ_G0019506
 protein coding gene Chr13:38056244-38082760 (+)
SPRET/EiJ MGP_SPRETEiJ_G0019336
 protein coding gene Chr13:37723947-37750544 (+)
WSB/EiJ MGP_WSBEiJ_G0019813
 protein coding gene Chr13:39407172-39434470 (+)



Homology
more
  • Human Ortholog
    SMIM13, small integral membrane protein 13
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SMIM13, small integral membrane protein 13
  • Synonyms
    C6orf228
  • Links
    NCBI Gene ID: 221710
    neXtProt AC: NX_P0DJ93
    UniProt: P0DJ93

  • Chr Location
    6p24.2; chr6:11093834-11138733 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
  • All Mutations and Alleles
    5
  • Chemically induced (other)
    1
  • Gene trapped
    2
  • Targeted
    2
  • Genomic Mutations
    1 involving Smim13
  • Incidental Mutations
    APF
  • Find Mice (IMSR)
    8 strains or lines available
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    708
  • Tissues
    2
  • cDNA Data
    74
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 108934 NCBI Gene Model | MGI Sequence Detail 26734 C57BL/6J ±  kb
transcript NM_001135577 RefSeq | MGI Sequence Detail 4499 C57BL/6  
polypeptide E9Q942 UniProt | EBI | MGI Sequence Detail 88 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 74
    cDNA 74

    Microarray probesets 3
Other
Accession IDs
less
MGI:1920158
References
more
  • Summaries
    All 30
    Developmental Gene Expression 1
    Gene Ontology 1
    Phenotypes 7
  • Earliest
    J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory