Smim13 MGI Mouse Gene Detail - MGI:2652854 - small integral membrane protein 13

Symbol

Smim13
Name

small integral membrane protein 13
Synonyms

2900036K02Rik, BC024659

Feature Type

protein coding gene
IDs

MGI:2652854
NCBI Gene: 108934
Alliance

gene page
Transcription Start Sites

7 TSS

Sequence Map

Chr13:41403320-41430053 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 13, 20.41 cM
Mapping Data

3 experiments

SNPs within 2kb

698 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2652854	protein coding gene	Chr13:41403320-41430053 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0020487	protein coding gene	Chr13:39736051-39764192 (+)
A/J	MGP_AJ_G0020441	protein coding gene	Chr13:38411679-38435942 (+)
AKR/J	MGP_AKRJ_G0020419	protein coding gene	Chr13:39455298-39480309 (+)
BALB/cJ	MGP_BALBcJ_G0020437	protein coding gene	Chr13:38595010-38618650 (+)
C3H/HeJ	MGP_C3HHeJ_G0020236	protein coding gene	Chr13:39333259-39359952 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0020870	protein coding gene	Chr13:40993264-41020049 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0018457	protein coding gene	Chr13:36543373-36566771 (+)
CAST/EiJ	MGP_CASTEiJ_G0019751	protein coding gene	Chr13:39115132-39138749 (+)
CBA/J	MGP_CBAJ_G0020197	protein coding gene	Chr13:42753738-42777560 (+)
DBA/2J	MGP_DBA2J_G0020319	protein coding gene	Chr13:37982156-38006429 (+)
FVB/NJ	MGP_FVBNJ_G0020298	protein coding gene	Chr13:37476116-37501716 (+)
LP/J	MGP_LPJ_G0020394	protein coding gene	Chr13:39978257-40003512 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0020327	protein coding gene	Chr13:42710689-42737076 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0020913	protein coding gene	Chr13:39101681-39127273 (+)
PWK/PhJ	MGP_PWKPhJ_G0019506	protein coding gene	Chr13:38056244-38082760 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0019336	protein coding gene	Chr13:37723947-37750544 (+)
WSB/EiJ	MGP_WSBEiJ_G0019813	protein coding gene	Chr13:39407172-39434470 (+)

Human Ortholog

SMIM13, small integral membrane protein 13

Vertebrate Orthologs

3

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

SMIM13, small integral membrane protein 13
Synonyms

C6orf228
Links

HGNC:27356

NCBI Gene ID: 221710

neXtProt AC: NX_P0DJ93

UniProt: P0DJ93
Chr Location

6p24.2; chr6:11093834-11138733 (+) GRCh38

MGI Vertebrate Homology

Smim13 stringent orthology
1 human;1 mouse;1 rat;1 zebrafish
HCOP

vertebrate homology predictions: SMIM13
Gene Tree

Smim13

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Phenotype Summary

7 phenotype references

All Mutations and Alleles

5
Chemically induced (other)

1
Gene trapped

2
Targeted

2
Genomic Mutations

1 involving Smim13
Incidental Mutations

APF
Find Mice (IMSR)

8 strains or lines available

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All GO Annotations

1
GO References

1

Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

708
Tissues

2
cDNA Data

74
Literature Summary

1

Images

Tissue x Stage Matrix

Other Mouse Links

Allen Institute

GEO

Expression Atlas

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All Sequences

35
RefSeq

2
UniProt

1
CCDS

CCDS49246.1

Ensembl

ENSMUSG00000091264 (Evidence)
NCBI Gene

108934

			Length	Strain/Species	Flank
genomic	108934	NCBI Gene Model \| MGI Sequence Detail	26734	C57BL/6J	± kb
transcript	NM_001135577	RefSeq \| MGI Sequence Detail	4499	C57BL/6
polypeptide	E9Q942	UniProt \| EBI \| MGI Sequence Detail	88	Not Applicable

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UniProt

1 Sequence
Protein Ontology

PR:000059760 small integral membrane protein 13

(term hierarchy)
InterPro Domains

IPR031851 Protein of unknown function DUF4750

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All nucleic 74

cDNA 74

Microarray probesets 3

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MGI:1920158

Summaries

All 30

Developmental Gene Expression 1

Gene Ontology 1

Phenotypes 7
Earliest

J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
Latest

J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for Smim13:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr119398	Chr13:41403223-41403244 (+)	-86 bp
Tssr119399	Chr13:41403287-41403313 (+)	-20 bp
Tssr119400	Chr13:41403317-41403339 (+)	8 bp
Tssr119401	Chr13:41403352-41403426 (+)	69 bp
Tssr119402	Chr13:41403436-41403449 (+)	123 bp
Tssr119403	Chr13:41403604-41403687 (+)	326 bp
Tssr119404	Chr13:41407556-41407558 (+)	4,237 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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