About   Help   FAQ
Trim50 Gene Detail
Summary
  • Symbol
    Trim50
  • Name
    tripartite motif-containing 50
  • Feature Type
    protein coding gene
  • IDs
    MGI:2664992
    NCBI Gene: 215061
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:135382149-135396859 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 75.15 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    492 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2664992
 protein coding gene Chr5:135380738-135396859 (+)
129S1/SvImJ MGP_129S1SvImJ_G0030180
 protein coding gene Chr5:139873369-139890236 (+)
A/J MGP_AJ_G0030148
 protein coding gene Chr5:133887293-133903110 (+)
AKR/J MGP_AKRJ_G0030081
 protein coding gene Chr5:138237963-138255665 (+)
BALB/cJ MGP_BALBcJ_G0030158
 protein coding gene Chr5:135242019-135258039 (+)
C3H/HeJ MGP_C3HHeJ_G0029874
 protein coding gene Chr5:138807124-138822573 (+)
C57BL/6NJ MGP_C57BL6NJ_G0030611
 protein coding gene Chr5:145094803-145112535 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0027834
 protein coding gene Chr5:128186732-128201329 (+)
CAST/EiJ MGP_CASTEiJ_G0029283
 protein coding gene Chr5:138217037-138231265 (+)
CBA/J MGP_CBAJ_G0029844
 protein coding gene Chr5:150789195-150808344 (+)
DBA/2J MGP_DBA2J_G0029995
 protein coding gene Chr5:133796813-133813059 (+)
FVB/NJ MGP_FVBNJ_G0029950
 protein coding gene Chr5:132924584-132939792 (+)
LP/J MGP_LPJ_G0030083
 protein coding gene Chr5:140330735-140345492 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0029982
 protein coding gene Chr5:153787554-153802894 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0030651
 protein coding gene Chr5:137982573-137999636 (+)
PWK/PhJ MGP_PWKPhJ_G0028998
 protein coding gene Chr5:132830957-132847356 (+)
SPRET/EiJ MGP_SPRETEiJ_G0028833
 protein coding gene Chr5:135548685-135562655 (+)
WSB/EiJ MGP_WSBEiJ_G0029357
 protein coding gene Chr5:138735985-138753856 (+)



Homology
more
  • Human Ortholog
    TRIM50, tripartite motif containing 50
  • Vertebrate Orthologs
    5
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRIM50, tripartite motif containing 50
  • Synonyms
    TRIM50A
  • Links
    NCBI Gene ID: 135892
    neXtProt AC: NX_Q86XT4
    UniProt: Q86XT4

  • Chr Location
    7q11.23; chr7:73312536-73328082 (-)  GRCh38
  • Human Ortholog
    TRIM73, tripartite motif containing 73
  • Synonyms
    TRIM50B
  • Links
    NCBI Gene ID: 375593
    neXtProt AC: NX_Q86UV7
    UniProt: Q86UV7

  • Chr Location
    7q11.23
  • Human Ortholog
    TRIM74, tripartite motif containing 74
  • Synonyms
    TRIM50C
  • Links
    NCBI Gene ID: 378108
    neXtProt AC: NX_Q86UV6
    UniProt: Q86UV6

  • Chr Location
    7q11.23; chr7:72954868-72969681 (-)  GRCh38
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotypes from 2 alleles in 2 genetic backgrounds
    1 images
    12 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a knock-out allele exhibit impaired secretion of gastric acid with impaired stimulated tubulovesicular dynamics.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    14
  • GO References
    6
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    720
  • Tissues
    7
  • cDNA Data
    1
  • Literature Summary
    2
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000053388 Ensembl Gene Model | MGI Sequence Detail 14711 C57BL/6J ±  kb
    transcript ENSMUST00000111180 Ensembl | MGI Sequence Detail 1456 Not Applicable  
    polypeptide ENSMUSP00000106811 Ensembl | MGI Sequence Detail 484 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 4
      Genomic 2
      cDNA 1
      Primer pair 1

      Microarray probesets 1
    References
    more
    • Summaries
      All 32
      Developmental Gene Expression 2
      Diseases 1
      Gene Ontology 6
      Phenotypes 12
    • Earliest
      J:182796 Li HH, et al., Induced chromosome deletions cause hypersociability and other features of Williams-Beuren syndrome in mice. EMBO Mol Med. 2009 Apr;1(1):50-65
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
    Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
    Send questions and comments to User Support.     		last database update
    11/12/2024
    MGI 6.24     		The Jackson Laboratory