Paral1 Gene Detail

Summary

• Symbol
  Paral1
• Name
  PPARG activating RBM14 associated lncRNA 1
• Synonyms
  BC034902, MGC:41714

• Feature Type
  unclassified gene
• IDs
  MGI:2677839
  NCBI Gene: 228642
• Alliance
  gene page
• Transcription Start Sites
  8 TSS

Location &
Maps

• Sequence Map
  Chr2:136343830-136357435 bp, + strand

  From MGI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 67.46 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  534 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2677839	unclassified gene	Chr2:136343830-136357435 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Human Ortholog
  PARAL1, PPARG activating RBM14 associated lncRNA 1

• Vertebrate Orthologs
  1

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  PARAL1, PPARG activating RBM14 associated lncRNA 1
  
• Synonyms
  NR_109
• Links
  HGNC:53772

  NCBI Gene ID: 101929371

  
  
• Chr Location
  chr20:9986088-10007116 (+)  GRCh38

---

• MGI Vertebrate Homology
  Paral1 stringent orthology
  1 human;1 mouse
  
• HCOP
  vertebrate homology predictions: PARAL1

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  21 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Paral1
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  203
• Tissues
  34
• cDNA Data
  11
• Literature Summary
  1

Images

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO

Sequences &
Gene Models

• All Sequences
  5
• UniProt
  1

• NCBI Gene
  228642

Representative Sequences			Length	Strain/Species
transcript	AK040732	GenBank | ENA | DDBJ | MGI Sequence Detail	2380	C57BL/6J
polypeptide	Q8K1Z3	UniProt | EBI | MGI Sequence Detail	98	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 11

  cDNA 11

  
  

  Microarray probesets 2

Other
Accession IDs

MGI:5912279

References

• Summaries
  All 35

  Developmental Gene Expression 1

  Diseases 1

  Phenotypes 21
• Earliest
  J:99768 Theiler K, et al., Development of coloboma (Cm/+), a mutation with anterior lens adhesion. Anat Embryol (Berl). 1981;162(1):121-6
• Latest
  J:255402 Firmin FF, et al., The RBM14/CoAA-interacting, long intergenic non-coding RNA Paral1 regulates adipogenesis and coactivates the nuclear receptor PPARgamma. Sci Rep. 2017 Oct 26;7(1):14087

TSS for Paral1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr20395	Chr2:136343824-136343837 (+)	1 bp
Tssr20396	Chr2:136343871-136343879 (+)	45 bp
Tssr20397	Chr2:136343886-136343897 (+)	62 bp
Tssr20398	Chr2:136343898-136343917 (+)	78 bp
Tssr668	Chr2:136343956-136343959 (+)	128 bp
Tssr20399	Chr2:136343966-136343967 (+)	137 bp
Tssr20400	Chr2:136343970-136343981 (+)	146 bp
Tssr20401	Chr2:136344163-136344180 (+)	342 bp