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BC048671 Gene Detail
Summary
  • Symbol
    BC048671
  • Name
    cDNA sequence BC048671
  • Synonyms
    MGC:58841
  • Feature Type
    protein coding gene
  • IDs
    MGI:2679261
    NCBI Gene: 243535
  • Alliance
    gene page
  • Transcription Start Sites
    10 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:90278201-90282430 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 40.12 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    146 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2679261
 protein coding gene Chr6:90278201-90282431 (+)
129S1/SvImJ MGP_129S1SvImJ_G0031033
 protein coding gene Chr6:91831482-91835704 (+)
A/J MGP_AJ_G0031001
 protein coding gene Chr6:88341657-88345875 (+)
AKR/J MGP_AKRJ_G0030933
 protein coding gene Chr6:90806127-90810357 (+)
BALB/cJ MGP_BALBcJ_G0031013
 protein coding gene Chr6:88286695-88290925 (+)
C3H/HeJ MGP_C3HHeJ_G0030695
 protein coding gene Chr6:93631489-93635713 (-)
C57BL/6NJ MGP_C57BL6NJ_G0031472
 protein coding gene Chr6:94252839-94257069 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0028641
 protein coding gene Chr6:86331842-86336142 (+)
CAST/EiJ MGP_CASTEiJ_G0030120
 protein coding gene Chr6:90917537-90921770 (+)
CBA/J MGP_CBAJ_G0030699
 protein coding gene Chr6:97782741-97786965 (+)
DBA/2J MGP_DBA2J_G0030852
 protein coding gene Chr6:87534853-87539077 (+)
FVB/NJ MGP_FVBNJ_G0030806
 protein coding gene Chr6:86736374-86740600 (+)
LP/J MGP_LPJ_G0030932
 protein coding gene Chr6:91797736-91801960 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0030840
 protein coding gene Chr6:101871935-101876161 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0031499
 protein coding gene Chr6:90654472-90658700 (+)
PWK/PhJ MGP_PWKPhJ_G0029836
 protein coding gene Chr6:86477121-86481349 (+)
SPRET/EiJ MGP_SPRETEiJ_G0029665
 protein coding gene Chr6:89541668-89545891 (+)
WSB/EiJ MGP_WSBEiJ_G0030204
 protein coding gene Chr6:91113757-91117983 (+)



Homology
more
  • Human Ortholog
    C3orf22, chromosome 3 open reading frame 22
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    C3orf22, chromosome 3 open reading frame 22
  • Links
    NCBI Gene ID: 152065
    neXtProt AC: NX_Q8N5N4
    UniProt: Q8N5N4

  • Chr Location
    3q21.3; chr3:126526999-126558965 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    13 phenotype references
Male mice homozygous for a null allele exhibit normal fertility.
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    10
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 243535 NCBI Gene Model | MGI Sequence Detail 4230 C57BL/6J ±  kb
    transcript NM_177738 RefSeq | MGI Sequence Detail 1211 C57BL/6  
    polypeptide Q8C5S3 UniProt | EBI | MGI Sequence Detail 137 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 10
      cDNA 10

      Microarray probesets 3
    References
    more
    • Summaries
      All 32
      Phenotypes 13
    • Earliest
      J:21726 Champion KM, et al., Identification of a heritable deficiency of the folate-dependent enzyme 10-formyltetrahydrofolate dehydrogenase in mice. Proc Natl Acad Sci U S A. 1994 Nov 22;91(24):11338-42
    • Latest
      J:348447 Nguyen TTT, et al., Gene-deficient mouse model established by CRISPR/Cas9 system reveals 15 reproductive organ-enriched genes dispensable for male fertility. Frontiers in Cell and Developmental Biology. 2024;12
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/12/2024
    MGI 6.24     		The Jackson Laboratory