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Cimap1c Gene Detail
Summary
  • Symbol
    Cimap1c
  • Name
    ciliary microtubule associated protein 1C
  • Synonyms
    LOC382075, MGC:58606, Odf3l1
  • Feature Type
    protein coding gene
  • IDs
    MGI:2681875
    NCBI Gene: 382075
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:56755943-56771963 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, 30.28 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    456 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2681875
 protein coding gene Chr9:56755940-56779199 (-)
129S1/SvImJ MGP_129S1SvImJ_G0034852
 protein coding gene Chr9:56006911-56010258 (-)
A/J MGP_AJ_G0034833
 protein coding gene Chr9:54202212-54205515 (-)
AKR/J MGP_AKRJ_G0034762
 protein coding gene Chr9:55458503-55461806 (-)
BALB/cJ MGP_BALBcJ_G0034825
 protein coding gene Chr9:53997567-54000871 (-)
C3H/HeJ MGP_C3HHeJ_G0034535
 protein coding gene Chr9:55920954-55924917 (-)
C57BL/6NJ MGP_C57BL6NJ_G0035344
 protein coding gene Chr9:57575243-57578547 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0032255
 protein coding gene Chr9:53542446-53545756 (-)
CAST/EiJ MGP_CASTEiJ_G0033856
 protein coding gene Chr9:55987643-55990948 (-)
CBA/J MGP_CBAJ_G0034506
 protein coding gene Chr9:59565799-59569105 (-)
DBA/2J MGP_DBA2J_G0034665
 protein coding gene Chr9:54086563-54089899 (-)
FVB/NJ MGP_FVBNJ_G0034607
 protein coding gene Chr9:53304694-53308000 (-)
LP/J MGP_LPJ_G0034748
 protein coding gene Chr9:56294158-56297478 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0034650
 protein coding gene Chr9:61065644-61068950 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0035366
 protein coding gene Chr9:55460921-55464236 (-)
PWK/PhJ MGP_PWKPhJ_G0033562
 protein coding gene Chr9:54107837-54111139 (-)
SPRET/EiJ MGP_SPRETEiJ_G0033395
 protein coding gene Chr9:55741681-55745046 (-)
WSB/EiJ MGP_WSBEiJ_G0033969
 protein coding gene Chr9:55399617-55402922 (-)



Homology
more
  • Human Ortholog
    CIMAP1C, ciliary microtubule associated protein 1C
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CIMAP1C, ciliary microtubule associated protein 1C
  • Synonyms
    ODF3L1
  • Links
    NCBI Gene ID: 161753
    neXtProt AC: NX_Q8IXM7
    UniProt: Q8IXM7

  • Chr Location
    15q24.2; chr15:75724041-75727688 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    4
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000045620 Ensembl Gene Model | MGI Sequence Detail 16021 C57BL/6J ±  kb
transcript ENSMUST00000215694 Ensembl | MGI Sequence Detail 1212 Not Applicable  
polypeptide ENSMUSP00000149166 Ensembl | MGI Sequence Detail 306 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 4
    cDNA 4

    Microarray probesets 1
Other
Accession IDs
less
MGI:2685962, MGI:7482238
References
more
  • Summaries
    All 21
    Gene Ontology 1
    Phenotypes 3
  • Earliest
    J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
  • Latest
    J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory