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Atmin Gene Detail
Summary
  • Symbol
    Atmin
  • Name
    ATM interactor
  • Synonyms
    Asciz, gpg6, MGC:79206, mKIAA0431
  • Feature Type
    protein coding gene
  • IDs
    MGI:2682328
    NCBI Gene: 234776
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:117670132-117687184 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 8, 63.37 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    529 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2682328
 protein coding gene Chr8:117670132-117687184 (+)
129S1/SvImJ MGP_129S1SvImJ_G0034167
 protein coding gene Chr8:120063227-120080207 (+)
A/J MGP_AJ_G0034147
 protein coding gene Chr8:115182560-115202224 (+)
AKR/J MGP_AKRJ_G0034074
 protein coding gene Chr8:118529803-118548078 (+)
BALB/cJ MGP_BALBcJ_G0034141
 protein coding gene Chr8:115379343-115396706 (+)
C3H/HeJ MGP_C3HHeJ_G0033852
 protein coding gene Chr8:119253900-119271702 (+)
C57BL/6NJ MGP_C57BL6NJ_G0034661
 protein coding gene Chr8:124140809-124157810 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0031603
 protein coding gene Chr8:108115207-108131516 (+)
CAST/EiJ MGP_CASTEiJ_G0033179
 protein coding gene Chr8:119069571-119086575 (+)
CBA/J MGP_CBAJ_G0033825
 protein coding gene Chr8:128621737-128638751 (+)
DBA/2J MGP_DBA2J_G0033981
 protein coding gene Chr8:114410658-114427671 (+)
FVB/NJ MGP_FVBNJ_G0033924
 protein coding gene Chr8:113386002-113403141 (+)
LP/J MGP_LPJ_G0034070
 protein coding gene Chr8:120195601-120212617 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0033971
 protein coding gene Chr8:131216339-131234395 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0034679
 protein coding gene Chr8:118623845-118640817 (+)
PWK/PhJ MGP_PWKPhJ_G0032881
 protein coding gene Chr8:114109905-114124570 (+)
SPRET/EiJ MGP_SPRETEiJ_G0032721
 protein coding gene Chr8:117310967-117330846 (+)
WSB/EiJ MGP_WSBEiJ_G0033295
 protein coding gene Chr8:119336491-119349833 (+)



Homology
more
  • Human Ortholog
    ATMIN, ATM interactor
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    ATMIN, ATM interactor
  • Synonyms
    ASCIZ, ZNF822
  • Links
    NCBI Gene ID: 23300
    neXtProt AC: NX_O43313
    UniProt: O43313

  • Chr Location
    16q23.2; chr16:81035842-81047350 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    65 phenotypes from 6 alleles in 10 genetic backgrounds
    14 phenotypes from multigenic genotypes
    8 images
    19 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a knock-out allele exhibit fetal lethality, craniofacial defects, midbrain exencephaly, and premature senescence of mouse embryonic fibroblasts. Homozygotes for an ENU-induced mutation exhibit left-right patterning defects.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    19
  • GO References
    6
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    773
  • Tissues
    35
  • cDNA Data
    95
  • Literature Summary
    6
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 234776 NCBI Gene Model | MGI Sequence Detail 17053 C57BL/6J ±  kb
    transcript NM_177700 RefSeq | MGI Sequence Detail 4900 C57BL/6  
    polypeptide Q6P9S1 UniProt | EBI | MGI Sequence Detail 818 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 96
      Genomic 1
      cDNA 95

      Microarray probesets 5
    Other
    Accession IDs
    less
    MGI:3640782
    References
    more
    • Summaries
      All 48
      Developmental Gene Expression 6
      Gene Ontology 6
      Phenotypes 19
    • Earliest
      J:82808 Strausberg RL, et al., Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903
    • Latest
      J:280048 Foster H, et al., ATMIN Is a Tumor Suppressor Gene in Lung Adenocarcinoma. Cancer Res. 2019 Oct 15;79(20):5159-5166
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/12/2024
    MGI 6.24     		The Jackson Laboratory