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Lrrc3c Gene Detail
Summary
  • Symbol
    Lrrc3c
  • Name
    leucine rich repeat containing 3C
  • Synonyms
    Gm12, LOC192852
  • Feature Type
    protein coding gene
  • IDs
    MGI:2684858
    NCBI Gene: 192852
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr11:98489117-98490412 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 11, 62.12 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    177 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2684858
 protein coding gene Chr11:98489117-98490412 (+)
129S1/SvImJ MGP_129S1SvImJ_G0003054
 antisense lncRNA gene Chr11:101163987-101164769 (+)
A/J MGP_AJ_G0003031
 antisense lncRNA gene Chr11:96946040-96946822 (+)
AKR/J MGP_AKRJ_G0003012
 antisense lncRNA gene Chr11:99951010-99951804 (+)
BALB/cJ MGP_BALBcJ_G0003018
 antisense lncRNA gene Chr11:97440876-97441652 (+)
C3H/HeJ MGP_C3HHeJ_G0002974
 antisense lncRNA gene Chr11:100089941-100090723 (+)
C57BL/6NJ MGP_C57BL6NJ_G0003160
 antisense lncRNA gene Chr11:104253766-104254548 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0002698
 antisense lncRNA gene Chr11:94386654-94387426 (+)
CAST/EiJ MGP_CASTEiJ_G0002944
 antisense lncRNA gene Chr11:100805239-100806025 (-)
CBA/J MGP_CBAJ_G0002971
 antisense lncRNA gene Chr11:108578083-108578865 (+)
DBA/2J MGP_DBA2J_G0002977
 antisense lncRNA gene Chr11:96489724-96490506 (+)
FVB/NJ MGP_FVBNJ_G0002996
 antisense lncRNA gene Chr11:96004211-96004993 (+)
LP/J MGP_LPJ_G0003053
 antisense lncRNA gene Chr11:101635447-101636229 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0002984
 antisense lncRNA gene Chr11:108345432-108346214 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0003164
 antisense lncRNA gene Chr11:100282207-100282993 (+)
PWK/PhJ MGP_PWKPhJ_G0002902
 antisense lncRNA gene Chr11:97507185-97507941 (+)
SPRET/EiJ MGP_SPRETEiJ_G0002847
 antisense lncRNA gene Chr11:99987414-99988192 (+)
WSB/EiJ MGP_WSBEiJ_G0002974
 antisense lncRNA gene Chr11:100210487-100211281 (+)



Homology
more
  • Human Ortholog
    LRRC3C, leucine rich repeat containing 3C
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    LRRC3C, leucine rich repeat containing 3C
  • Links
    NCBI Gene ID: 100505591
    neXtProt AC: NX_A6NJW4
    UniProt: A6NJW4

  • Chr Location
    chr17:39927732-39944999 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    2
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 192852 NCBI Gene Model | MGI Sequence Detail 1296 C57BL/6J ±  kb
transcript NM_001195544 RefSeq | MGI Sequence Detail 902 C57BL/6  
polypeptide NP_001182473 RefSeq | MGI Sequence Detail 255 C57BL/6  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR001611 Leucine-rich repeat
    IPR032675 Leucine-rich repeat domain superfamily
    IPR003591 Leucine-rich repeat, typical subtype
Molecular
Reagents
less
  • All nucleic 2
    cDNA 2
References
more
  • Summaries
    All 17
    Gene Ontology 1
    Phenotypes 6
  • Earliest
    J:56548 Zheng B, et al., Engineering a mouse balancer chromosome. Nat Genet. 1999 Aug;22(4):375-8
  • Latest
    J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory