Lcn11 MGI Mouse Gene Detail - MGI:2684955

Sequence Map

Chr2:25667029-25670291 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2684955	protein coding gene	Chr2:25667029-25670291 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0025470	protein coding gene	Chr2:23701880-23705142 (+)
A/J	MGP_AJ_G0025447	protein coding gene	Chr2:22792126-22795403 (+)
AKR/J	MGP_AKRJ_G0025417	protein coding gene	Chr2:23537846-23541123 (+)
BALB/cJ	MGP_BALBcJ_G0025443	protein coding gene	Chr2:22895224-22898486 (+)
C3H/HeJ	MGP_C3HHeJ_G0025204	protein coding gene	Chr2:23464682-23467944 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0025887	protein coding gene	Chr2:24458511-24461773 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0023298	protein coding gene	Chr2:21677284-21680640 (+)
CAST/EiJ	MGP_CASTEiJ_G0024667	protein coding gene	Chr2:23350254-23353534 (+)
CBA/J	MGP_CBAJ_G0025182	protein coding gene	Chr2:25299249-25302511 (+)
DBA/2J	MGP_DBA2J_G0025315	protein coding gene	Chr2:22616511-22619788 (+)
FVB/NJ	MGP_FVBNJ_G0025277	protein coding gene	Chr2:22360517-22363779 (+)
LP/J	MGP_LPJ_G0025401	protein coding gene	Chr2:23634169-23637431 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0025308	protein coding gene	Chr2:25471848-25475110 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0025946	protein coding gene	Chr2:23493500-23496799 (+)
PWK/PhJ	MGP_PWKPhJ_G0024415	protein coding gene	Chr2:22411836-22415241 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0024215	protein coding gene	Chr2:23611917-23615149 (+)
WSB/EiJ	MGP_WSBEiJ_G0024736	protein coding gene	Chr2:23559282-23562557 (+)

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Molecular Function

carbohydrate derivative binding	cytoskeletal protein binding	DNA binding	enzyme regulator	hydrolase	ligase	lipid binding	oxidoreductase	RNA binding	signaling receptor activity	signaling receptor binding	transcription	transferase	transporter

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	membraneless organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

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			Length	Strain/Species	Flank
genomic	227630	NCBI Gene Model \| MGI Sequence Detail	3263	C57BL/6J	± kb
transcript	NM_001100455	RefSeq \| MGI Sequence Detail	652	C57BL/6
polypeptide	NP_001093925	RefSeq \| MGI Sequence Detail	178	C57BL/6

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Summaries

All 16

Gene Ontology 1

Phenotypes 4
Earliest

J:92984 Suzuki K, et al., Molecular evolution of epididymal lipocalin genes localized on mouse chromosome 2. Gene. 2004 Sep 15;339:49-59

TSS for Lcn11:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr16771	Chr2:25667027-25667033 (+)	1 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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