Taar6 MGI Mouse Gene Detail - MGI:2685074 - trace amine-associated receptor 6

Symbol

Taar6
Name

trace amine-associated receptor 6
Synonyms

LOC215855

Feature Type

protein coding gene
IDs

MGI:2685074
NCBI Gene: 215855
Alliance

gene page

Sequence Map

Chr10:23860507-23861544 bp, - strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 10, 11.40 cM
Mapping Data

1 experiment

SNPs within 2kb

180 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2685074	protein coding gene	Chr10:23860507-23861544 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0017081	protein coding gene	Chr10:21921142-21922179 (-)
A/J	MGP_AJ_G0017059	protein coding gene	Chr10:21276885-21277922 (-)
AKR/J	MGP_AKRJ_G0017021	protein coding gene	Chr10:21624346-21625383 (-)
BALB/cJ	MGP_BALBcJ_G0017021	protein coding gene	Chr10:21363364-21364401 (-)
C3H/HeJ	MGP_C3HHeJ_G0016841	protein coding gene	Chr10:21831741-21832778 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0017479	protein coding gene	Chr10:22584914-22585951 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0015180	protein coding gene	Chr10:20005351-20006388 (-)
CAST/EiJ	MGP_CASTEiJ_G0016422	protein coding gene	Chr10:21727425-21728462 (-)
CBA/J	MGP_CBAJ_G0016814	protein coding gene	Chr10:23578215-23579252 (-)
DBA/2J	MGP_DBA2J_G0016920	protein coding gene	Chr10:21019025-21020062 (-)
FVB/NJ	MGP_FVBNJ_G0016916	protein coding gene	Chr10:20732338-20733375 (-)
LP/J	MGP_LPJ_G0016996	protein coding gene	Chr10:21906856-21907893 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0016946	protein coding gene	Chr10:23714053-23715090 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0017514	protein coding gene	Chr10:21495929-21496966 (-)
PWK/PhJ	MGP_PWKPhJ_G0016207	protein coding gene	Chr10:20756814-20757851 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0015989	protein coding gene	Chr10:21309443-21310480 (-)
WSB/EiJ	MGP_WSBEiJ_G0016485	protein coding gene	Chr10:21593344-21594381 (-)

Human Ortholog

TAAR6, trace amine associated receptor 6

Vertebrate Orthologs

3

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

TAAR6, trace amine associated receptor 6
Synonyms

TA4, taR-4, TAR4, taR-6, TAR6, TRAR4
Links

HGNC:20978

NCBI Gene ID: 319100

neXtProt AC: NX_Q96RI8

UniProt: Q96RI8
Chr Location

6q23.2; chr6:132570322-132571359 (+) GRCh38

MGI Vertebrate Homology

Taar6 stringent orthology
1 human;1 mouse;1 rat;1 zebrafish
HCOP

vertebrate homology predictions: TAAR6
Gene Tree

Taar6

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Phenotype Summary

4 phenotypes from 1 allele in 2 genetic backgrounds
17 phenotype references

Phenotype Overview

Blue squares indicate phenotypes directly attributed to mutations/alleles of this gene.

adipose tissue	behavior/neurological	cardiovascular system	cellular	craniofacial	digestive/alimentary system	embryo	endocrine/exocrine glands	growth/size/body	hearing/vestibular/ear	hematopoietic system	homeostasis/metabolism	integument	immune system	limbs/digits/tail	liver/biliary system	mortality/aging	muscle	nervous system	pigmentation	renal/urinary system	reproductive system	respiratory system	skeleton	taste/olfaction	neoplasm	vision/eye

Click cells to view annotations.

All Mutations and Alleles

7
Chemically induced (other)

1
Targeted

6
Genomic Mutations

4 involving Taar6
Incidental Mutations

Mutagenetix , APF , CvDC
Find Mice (IMSR)

23 strains or lines available
Comparison Matrix

Gene Expression + Phenotype

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All GO Annotations

9
GO References

4

Molecular Function

carbohydrate derivative binding	cytoskeletal protein binding	DNA binding	enzyme regulator	hydrolase	ligase	lipid binding	oxidoreductase	RNA binding	signaling receptor activity	signaling receptor binding	transcription	transferase	transporter

Biological Process

carbohydrate derivative metabolism	cell differentiation	cell population proliferation	cellular component organization	DNA-templated transcription	establishment of localization	homeostatic process	immune system process	lipid metabolic process	programmed cell death	protein metabolic process	response to stimulus	signaling	system development

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	membraneless organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

723
Tissues

7
cDNA Data

3
Literature Summary

2

Images

Tissue x Stage Matrix

Comparison Matrix

Gene Expression + Phenotype

Other Mouse Links

Allen Institute

GEO

Expression Atlas

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All Sequences

26
RefSeq

2
UniProt

1
CCDS

CCDS23739.1

Ensembl

ENSMUSG00000045111 (Evidence)
NCBI Gene

215855

			Length	Strain/Species	Flank
genomic	215855	NCBI Gene Model \| MGI Sequence Detail	1038	C57BL/6J	± kb
transcript	NM_001010828	RefSeq \| MGI Sequence Detail	1038	C57BL/6
polypeptide	Q5QD13	UniProt \| EBI \| MGI Sequence Detail	345	Not Applicable

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UniProt

1 Sequence
Protein Ontology

PR:000001715 trace amine-associated receptor 6

(term hierarchy)
InterPro Domains

IPR017452 GPCR, rhodopsin-like, 7TM

IPR000276 G protein-coupled receptor, rhodopsin-like

IPR050569 Trace Amine-Associated Receptor

IPR009132 Trace amine associated receptor family
GlyGen

Q5QD13 1 site

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All nucleic 5

cDNA 3

Primer pair 1

Other 1

Microarray probesets 1

Summaries

All 36

Developmental Gene Expression 2

Gene Ontology 4

Phenotypes 17
Earliest

J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
Latest

J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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