Itih6 Gene Detail

Summary

• Symbol
  Itih6
• Name
  inter-alpha-trypsin inhibitor heavy chain family member 6
• Synonyms
  Itih5l-ps, LOC207350

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:2685232
  NCBI Gene: 634882
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:149609968-149639936 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 68.46 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  625 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2685232	protein coding gene	ChrX:149609892-149640732 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0039856	pseudogene	ChrX:148551056-148584595 (+)
A/J	MGP_AJ_G0039861	pseudogene	ChrX:147750309-147779915 (+)
AKR/J	MGP_AKRJ_G0039787	pseudogene	ChrX:152519527-152550207 (+)
BALB/cJ	MGP_BALBcJ_G0039835	pseudogene	ChrX:145963578-145995383 (+)
C3H/HeJ	MGP_C3HHeJ_G0039487	pseudogene	ChrX:148739761-148785227 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0040408	pseudogene	ChrX:152737970-152771897 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036993	pseudogene	ChrX:139551127-139581413 (+)
CAST/EiJ	MGP_CASTEiJ_G0038593	pseudogene	ChrX:128197285-128228712 (+)
CBA/J	MGP_CBAJ_G0039455	pseudogene	ChrX:157271299-157310886 (+)
DBA/2J	MGP_DBA2J_G0039656	pseudogene	ChrX:146845784-146878311 (+)
FVB/NJ	MGP_FVBNJ_G0039615	pseudogene	ChrX:145990183-146020075 (+)
LP/J	MGP_LPJ_G0039694	pseudogene	ChrX:149612742-149645485 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039612	pseudogene	ChrX:165365006-165405386 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040506	pseudogene	ChrX:148048607-148081542 (+)
PWK/PhJ	MGP_PWKPhJ_G0038267	pseudogene	ChrX:125172876-125206749 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0038011	pseudogene	ChrX:128650093-128683259 (+)
WSB/EiJ	MGP_WSBEiJ_G0038824	pseudogene	ChrX:146151351-146183138 (+)

Homology

• Human Ortholog
  ITIH6, inter-alpha-trypsin inhibitor heavy chain family member 6

• Vertebrate Orthologs
  1

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  ITIH6, inter-alpha-trypsin inhibitor heavy chain family member 6
  
• Synonyms
  dJ14O9.1, ITIH5L, UNQ6369
• Links
  HGNC:28907

  NCBI Gene ID: 347365

  neXtProt AC: NX_Q6UXX5

  UniProt: Q6UXX5

  
  
• Chr Location
  Xp11.22; chrX:54748918-54798255 (-)  GRCh38

---

• MGI Vertebrate Homology
  Itih6 stringent orthology
  1 human;1 mouse
  
• HCOP
  vertebrate homology predictions: ITIH6
• Gene Tree
  Itih6
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas
• Other Vertebrate Links
  Xenbase itih6

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  7

• Ensembl
  ENSMUSG00000087149 (Evidence)
• NCBI Gene
  634882

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087149	Ensembl Gene Model | MGI Sequence Detail	29969	C57BL/6J
transcript	ENSMUST00000145639	Ensembl | MGI Sequence Detail	3964	Not Applicable
polypeptide	NP_001276804	RefSeq | MGI Sequence Detail	1284	C57BL/6

Other
Accession IDs

MGI:6888044

References

• Summaries
  All 6
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:94790 Mouse Genome Informatics Scientific Curators, Mouse Synonym Curation. 2005;

TSS for Itih6:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr162320	ChrX:149609921-149609925 (+)	-45 bp