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Podnl1 Gene Detail
Summary
  • Symbol
    Podnl1
  • Name
    podocan-like 1
  • Synonyms
    5832418A03Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2685352
    NCBI Gene: 244550
  • Alliance
    gene page
  • Transcription Start Sites
    10 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:84852618-84859156 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 8, 40.31 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    192 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2685352
 protein coding gene Chr8:84852552-84869620 (+)
129S1/SvImJ MGP_129S1SvImJ_G0033855
 protein coding gene Chr8:84996618-85003112 (+)
A/J MGP_AJ_G0033838
 protein coding gene Chr8:81667621-81674123 (+)
AKR/J MGP_AKRJ_G0033764
 protein coding gene Chr8:84081523-84088017 (+)
BALB/cJ MGP_BALBcJ_G0033831
 protein coding gene Chr8:81774814-81781314 (+)
C3H/HeJ MGP_C3HHeJ_G0033541
 protein coding gene Chr8:84692353-84698888 (+)
C57BL/6NJ MGP_C57BL6NJ_G0034351
 protein coding gene Chr8:88264528-88272828 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0031293
 protein coding gene Chr8:75466327-75472842 (+)
CAST/EiJ MGP_CASTEiJ_G0032871
 protein coding gene Chr8:84112522-84119042 (+)
CBA/J MGP_CBAJ_G0033517
 protein coding gene Chr8:91370085-91376586 (+)
DBA/2J MGP_DBA2J_G0033671
 protein coding gene Chr8:81306987-81313489 (+)
FVB/NJ MGP_FVBNJ_G0033618
 protein coding gene Chr8:80229695-80236192 (+)
LP/J MGP_LPJ_G0033762
 protein coding gene Chr8:85108892-85115388 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0033660
 protein coding gene Chr8:93874965-93881461 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0034368
 protein coding gene Chr8:84063450-84069969 (+)
PWK/PhJ MGP_PWKPhJ_G0032575
 protein coding gene Chr8:80532820-80539454 (+)
SPRET/EiJ MGP_SPRETEiJ_G0032411
 protein coding gene Chr8:82869642-82876130 (+)
WSB/EiJ MGP_WSBEiJ_G0032984
 protein coding gene Chr8:84470810-84477305 (+)



Homology
more
  • Human Ortholog
    PODNL1, podocan like 1
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    PODNL1, podocan like 1
  • Synonyms
    SLRR5B
  • Links
    NCBI Gene ID: 79883
    neXtProt AC: NX_Q6PEZ8
    UniProt: Q6PEZ8

  • Chr Location
    19p13.12; chr19:13931187-13953392 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    36 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    3
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    5
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000012889 Ensembl Gene Model | MGI Sequence Detail 6539 C57BL/6J ±  kb
transcript ENSMUST00000093380 Ensembl | MGI Sequence Detail 2090 Not Applicable  
polypeptide ENSMUSP00000091073 Ensembl | MGI Sequence Detail 559 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 5
    cDNA 5

    Microarray probesets 1
References
more
  • Summaries
    All 53
    Developmental Gene Expression 1
    Gene Ontology 3
    Phenotypes 36
  • Earliest
    J:13049 Gruneberg H, Genetical studies on the skeleton of the mouse. XVIII. Three genes for syndactylism. J Genet. 1956;54(1):113-145
  • Latest
    J:348117 Okuma H, et al., N-terminal domain on dystroglycan enables LARGE1 to extend matriglycan on alpha-dystroglycan and prevents muscular dystrophy. Elife. 2023 Feb 1;12
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory