Gm518 Pseudogene Detail

Summary

• Symbol
  Gm518
• Name
  predicted pseudogene 518
• Synonyms
  LOC245015

• Feature Type
  pseudogene
• IDs
  MGI:2685364
  NCBI Gene: 245015
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:99705342-99731142 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 52.08 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  981 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2685364	pseudogene	Chr9:99705342-99731142 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm518
• Find Mice (IMSR)
  0 strains or lines available

Expression

• cDNA Data
  1

Sequences &
Gene Models

• All Sequences
  5
• RefSeq
  2

• NCBI Gene
  245015

Representative Sequences			Length	Strain/Species
genomic	245015	NCBI Gene Model | MGI Sequence Detail	25801	C57BL/6J
transcript	BU938365	GenBank | ENA | DDBJ | MGI Sequence Detail	880	Not Specified

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:90438 Mouse Genome Informatics Scientific Curators, Obtaining and loading genome assembly coordinates from NCBI annotations. 2005;

TSS for Gm518:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr86691	Chr9:99710712-99710713 (+)	5,371 bp