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E130006D01Rik Gene Detail
Summary
  • Symbol
    E130006D01Rik
  • Name
    RIKEN cDNA E130006D01 gene
  • Synonyms
    Gm16018, Hrtlincr5, LOC269683
  • Feature Type
    lncRNA gene
  • IDs
    MGI:2685527
    NCBI Gene: 269683
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:111882150-111909594 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 54.23 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    802 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2685527
 lncRNA gene Chr5:111881540-111909638 (-)
129S1/SvImJ MGP_129S1SvImJ_G0006753
 lincRNA gene Chr5:114255665-114286139 (-)
A/J MGP_AJ_G0006747
 lincRNA gene Chr5:109826212-109854563 (-)
AKR/J MGP_AKRJ_G0006717
 lincRNA gene Chr5:113311890-113345253 (-)
BALB/cJ MGP_BALBcJ_G0006723
 lincRNA gene Chr5:111196090-111226372 (-)
C3H/HeJ MGP_C3HHeJ_G0006668
 lincRNA gene Chr5:113739608-113771157 (-)
C57BL/6NJ MGP_C57BL6NJ_G0006888
 lincRNA gene Chr5:118739555-118770611 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0006144
 lincRNA gene Chr5:104662921-104690471 (-)
CAST/EiJ MGP_CASTEiJ_G0006591
 lincRNA gene Chr5:112643605-112673363 (-)
CBA/J MGP_CBAJ_G0006650
 lincRNA gene Chr5:123180335-123217658 (-)
DBA/2J MGP_DBA2J_G0006670
 lincRNA gene Chr5:109903811-109931450 (-)
FVB/NJ MGP_FVBNJ_G0006694
 lincRNA gene Chr5:108605117-108639012 (-)
LP/J MGP_LPJ_G0006754
 lincRNA gene Chr5:114828241-114859617 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0006678
 lincRNA gene Chr5:127790067-127819292 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0006890
 lincRNA gene Chr5:112749055-112778114 (-)
PWK/PhJ MGP_PWKPhJ_G0006530
 lincRNA gene Chr5:108496291-108524066 (-)
SPRET/EiJ MGP_SPRETEiJ_G0006436
 lincRNA gene Chr5:110223032-110252079 (-)
WSB/EiJ MGP_WSBEiJ_G0006642
 lincRNA gene Chr5:113246823-113280810 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotype references
  • All Mutations and Alleles
    5
  • Chemically induced (other)
    1
  • Endonuclease-mediated
    1
  • Gene trapped
    2
  • Radiation induced
    1
  • Genomic Mutations
    2 involving E130006D01Rik
  • Find Mice (IMSR)
    0 strains or lines available
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    754
  • Tissues
    13
  • cDNA Data
    4
  • Literature Summary
    2
Sequences &
Gene Models
less
  • All Sequences
    38
  • RefSeq
    4
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 269683 NCBI Gene Model | MGI Sequence Detail 27445 C57BL/6J ±  kb
transcript NR_045832 RefSeq | MGI Sequence Detail 931 C57BL/6  
polypeptide Q8BN83 UniProt | EBI | MGI Sequence Detail 109 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 8
    Genomic 2
    cDNA 4
    Primer pair 2

    Microarray probesets 1
Other
Accession IDs
less
MGI:3802085
References
more
  • Summaries
    All 20
    Developmental Gene Expression 2
    Phenotypes 8
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:284183 George MR, et al., Minimal in vivo requirements for developmentally regulated cardiac long intergenic non-coding RNAs. Development. 2019 Dec 9;146(23):dev185314
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
08/02/2024
MGI 6.24 		The Jackson Laboratory