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Lkaaear1 Gene Detail
Summary
  • Symbol
    Lkaaear1
  • Name
    LKAAEAR motif containing 1 (IKAAEAR murine motif)
  • Synonyms
    4930526D03Rik, LOC277496
  • Feature Type
    protein coding gene
  • IDs
    MGI:2685538
    NCBI Gene: 277496
  • Alliance
    gene page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:181338586-181340235 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 103.73 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    88 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2685538
 protein coding gene Chr2:181338586-181340235 (-)
129S1/SvImJ MGP_129S1SvImJ_G0027035
 protein coding gene Chr2:188319529-188321190 (-)
A/J MGP_AJ_G0027001
 protein coding gene Chr2:180552317-180553966 (-)
AKR/J MGP_AKRJ_G0026971
 protein coding gene Chr2:185969074-185970723 (-)
BALB/cJ MGP_BALBcJ_G0027009
 protein coding gene Chr2:181032917-181034566 (-)
C3H/HeJ MGP_C3HHeJ_G0026751
 protein coding gene Chr2:186313121-186314770 (-)
C57BL/6NJ MGP_C57BL6NJ_G0027455
 protein coding gene Chr2:193757785-193759434 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0024819
 protein coding gene Chr2:171234639-171237145 (-)
CAST/EiJ MGP_CASTEiJ_G0026210
 protein coding gene Chr2:184592198-184593853 (-)
CBA/J MGP_CBAJ_G0026728
 protein coding gene Chr2:200780739-200782400 (-)
DBA/2J MGP_DBA2J_G0026865
 protein coding gene Chr2:179654700-179656349 (-)
FVB/NJ MGP_FVBNJ_G0026831
 protein coding gene Chr2:178275050-178276699 (-)
LP/J MGP_LPJ_G0026967
 protein coding gene Chr2:188337052-188338713 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0026851
 protein coding gene Chr2:203331685-203333346 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0027515
 protein coding gene Chr2:185945015-185946664 (-)
PWK/PhJ MGP_PWKPhJ_G0025946
 protein coding gene Chr2:177184896-177186545 (-)
SPRET/EiJ MGP_SPRETEiJ_G0025746
 protein coding gene Chr2:182436028-182437686 (-)
WSB/EiJ MGP_WSBEiJ_G0026282
 protein coding gene Chr2:186928268-186929917 (-)



Homology
more
  • Human Ortholog
    LKAAEAR1, LKAAEAR motif containing 1
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    LKAAEAR1, LKAAEAR motif containing 1
  • Synonyms
    C20orf201
  • Links
    NCBI Gene ID: 198437
    neXtProt AC: NX_Q8TD35
    UniProt: Q8TD35

  • Chr Location
    20q13.33; chr20:64083376-64084953 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotypes from 1 allele in 1 genetic background
    4 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    7
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 277496 NCBI Gene Model | MGI Sequence Detail 1650 C57BL/6J ±  kb
    transcript NM_001378943 RefSeq | MGI Sequence Detail 791 C57BL/6  
    polypeptide Q8BIG2 UniProt | EBI | MGI Sequence Detail 198 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 7
      cDNA 7

      Microarray probesets 2
    References
    more
    • Summaries
      All 21
      Phenotypes 4
    • Earliest
      J:162220 Magdaleno S, et al., BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. PLoS Biol. 2006 Apr;4(4):e86
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    12/10/2024
    MGI 6.24     		The Jackson Laboratory